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Unigene SGN-U288246

Unigene Basic Information

Unigene ID:	SGN-U288246
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288246
mRNA sequence:	Length: 229 bp

>SGN-U288246 Solanum tuberosum #4 (1 members)
GTATGTTAGAAAGCGGCGGCTGTGGTGGCAGTGGTTGTGGAGGCTGTGGTGGTGGTGGTTGTGGAAGTATGTTAGAAAGCGGTGGCTGTG
GAGGCTGTGGTGGTGGTGGCTGTGGAAATAGGTTAGAAAGTGGCGGCTGTGGAGGTTGTGGTGGTGGTGGTTGTGGTGGCGGTGGATGTG
GTAATGGTTTGGCATCTATCACCACTGTTGAAGTTAATGCATAAATGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E436093
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P230313 (76 Aa)

IIYALTSTVVIDAKPLPHPPPPQPPPPQPPQPPLSNLFPQPPPPQPPQPPLSNILPQPPPPQPPQPLPPQPPLSNI

SignalP predicts non-secretion with a score of 0.102

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P98524 (76 Aa)

MLESGGCGGSGCGGCGGGGCGSMLESGGCGGCGGGGCGNRLESGGCGGCGGGGCGGGGCGNGLASITTVEVNAXND

SignalP predicts non-secretion with a score of 0.199

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	21977	RNA_rec_mot	370
5	56304	Eggshell	94
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	125457		3
5	129522	Eukaryotic translation initiation factor 4E (eIF-4E) - Molecular Function: RNA binding (GO:0003723) - Molecular Function: translation initiation factor activity (GO:0003743) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: translational initiation (GO:0006413)	19

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260110	Solanum tuberosum #3

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