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Unigene SGN-U289543

Unigene Basic Information

Unigene ID:	SGN-U289543
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289543
mRNA sequence:	Length: 239 bp

>SGN-U289543 Solanum tuberosum #4 (1 members)
CGAGGGGAATACGGAATTTTCCGGCGTGCTCCTTCTTCTCCGAACAACCCTTACACAATACCAATTATGCCCCTCGTTGCTTTCAGGGTC
GGAATACCTCCATTTTCCCAAGCTCTCTGCAACCTTCTTCTTCTGAATCAATATTCCAGTAAACAAGTGAAATTTCCAAAGAAAATCAGC
CAAAATTCTGCAACTTCTGTTCGCCCTGCAGATTCTGGCAGTCCCCTAAGGAAAACCCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E481183
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P231655 (79 Aa)

RGEYGIFRRAPSSPNNPYTIPIMPLVAFRVGIPPFSQALCNLLLLNQYSSKQVKFPKKISQNSATSVRPADSGSPLRKT

SignalP predicts non-secretion with a score of 0.165

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99763 (80 Aa)

RGEYGIFRRAPSSPNNPYTIPIMPLVAFRVGIPPFSQALCNLLLLNQYSSKQVKFPKKISQNSATSVRPADSGXSPKENP

SignalP predicts non-secretion with a score of 0.165

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	412	Sun_Nop1/Nop2 Sun	42
2	26114	SAM_bind Sun_Nop1/Nop2 Sun Ribosomal_L29 NusB NusB_dom	5
5	92253		1
1.1	101382	Armadillo-like helical - Molecular Function: binding (GO:0005488)	408
2	123453	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p NusB/RsmB/TIM44 - Molecular Function: RNA binding (GO:0003723) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260701	Solanum tuberosum #3

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