Sol Genomics Network

Unigene SGN-U291523

Unigene Basic Information

Unigene ID:	SGN-U291523
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	291523
mRNA sequence:	Length: 2720 bp

>SGN-U291523 Solanum tuberosum #4 (1 members)
TAATTCGCGGCCGTCCACCATCCAATTCTTTTTCTCTCTAGTATAATGTATAATTCTTTTTCTCTTCTTCCATTACATAATTAATATGAT
GAATATGGAAGTGAAATATTCATCACATGGTTTCTACAATAGAAACATGAGTGATGGAGATGGGGAGAAAATCCAAACAAAAGAAGATAT
GTATAATAATAATAATAATAATGAGAGAGGTGGTAATTCAGGTTTAGGAAATATGAGTTTTCACAACCTGTCAAAGCTCATTCTTCCTCC
TTTAGGTTCCTCTGGTTATAACCAGAATCAGACTGATCTGCACAAAGGCAACACTATCTCACCTATCACTTCAACATACAGGTGTTGGGA
GACACTAATGGTGCTATTGGTGGCATATTGTGCATGGGTATGTCCATTTGAGATAGCATTCATGAACTTAAATCCAAACAAGAAGCTTTA
CATCGCAGATAATATTGTAAATCTCGTTTTTGCCGCTGATATCATCTTGACCTTCTCCGTCGCATACATTGATTCAACCTCTCAGTTGCT
TGTTCGTGATAGAAGAAAAATTGCTACGAGATACGTATCAACATGGTTTCTGATGGATGTGGCCTCTACCATCCCTTTTGACTTACTAGC
CATGTTGTTTACTGGCAAACATCAAGTTGGCATCTCTTACTCTGTTTTAGGAATCCTCAGATTTTGGCGTCTTCGCAAAGTTAAGCAATT
TTTCACCCGACTTGAAAAGGATATGAGATTCAGCTATTTTTGGATCAGATGTGCTAGGCTTTTGTTTGTAACACTATTTTCAGTGCACTG
TGCTGGATGCCTCTACTACTTGTTGGCTGACAGATATCCCCACCAAGGAAATACTTGGTTAGGATCTGTGAATCCCAAGTTCAGAGAGAC
AAGCCTTTGGATTAGGTACATTTCAGCTATTTATTGGTCTATCACCACAATGACAACTGTTGGCTATGGTGACCTCCATGCTGTTAACAC
TGTCGAAATGATCTTCATCATTTTCTACATGCTCTTCAATCTTGGCCTTACCGCTTACATTATTGGCAACATGACCAATTTAGTTGTTGA
AGGAACCAGTCGCACCATGGAATTTAGAAATAGCATACAGTCAGCTTCAAACTTCGTGAGTCGAAATCACTTGCCTCCAAGACTGAAGGA
GCAAATACTGGCTTACATGTGCTTAAGATTCAAGGCAGAGAGCTTAAACCAACAACAACTAATTGAACAACTTCCCAAGACAATCTGCAA
GAGTATCCGACATCATTTGTTTTTGCCAACTGTTGAAAAGGTCTATCTTTTCAAGGGTATCTCCAGGGAAATTCTCTTGCACCTTGTTGC
AGATATGAAGGCTGAGTATATACCACCAAGGGAGGATGTCATAATGCAGAATGAATCGCCAGATGAGGTTTATATCATAGTTTCAGGGGA
GGTGGAAATGATTGATAGTGAGATGGAGAATGAACAGATTGTTTGGACTCTGAGATGTGGAGACATGTTTGGAGAAGTTGGGGCCTTTTG
TTGTAGGCCTCAGAGCTACACGTATCGGACAAGGACACTTTCACAACTCTTAAAGATAAGAACAAGTTCTTTGATTGAAGCAATGAAGAG
CAGGCAAGAGGATAACGTCACCATGATGAAGAACTTTCTTCAGCATCATAAGAAGCTCAAGGATCTAAGACTTACAGATTTGTTCCTTGA
TGTTGGGGACGAAGATAGCGATCCAAACATGTCCATCAATTTGTTGACTGTTGCCAGTACAGGCAATGCTGCCTTTCTTGATGAGCTTCT
CAAGGCAAGATTAGACCCTAATATTTGTGATTCCAAAGGGAAAACTCCACTGCATATAGCAGCATCAAAAGGGCACGAAGAATGTGTAAT
GGTGCTTCTCAGACATGGATGTAACATACACTTACAAGATGTAAATGGTGACACCGCATTATGGGAAGCTATAGCAGCAAAACAACATCC
CATATTTGAAATCCTGTACCATTGGGCATGTATTTCTGATCCATATGTTTCTGGTGACCTCCTATGTAAAGCAGCTAGGAGGAATGAATT
AACAATTATGAAGGAACTCCTCAAACATGGATTACTTGTTAACTCAAACGATCGACATAGATCAACTGCTATCCATGTTGCAATAGAAGA
AAATCATTTAGAGATGGTAAAGCTTTTATTATTAAACGGTGATGAGATTGATGATACATTGAAGGACAAGCTTTCATCAATGAACCTAAG
TGAAATGCTGCAAAAACAAGACGTCGGGCACAGGATAATAATATCCGATACTATGGATGAAGTTGATCATAAGGAGCATGAACAGGAACA
AAAATACGACTTTGAAAGCCATACAGATCAATGTGCTTTTAGAGTTAGCATATACAGAGGTCATCCTGAGTTCAGGAGAAGAACTCAGTG
CAATGAACTGGGAAGGTTAATAAAGCTTCCCGATTCACTTGCAAAACTCAAAGGCATTGCAGGTCAGAAGTTTGGTTTTGAAGCAAAAGA
TGCTTTGGTGACAAATGAAGAAGGAGCGGAAATTGACTCTGTGGAAGTCATACGGGATAACGATAAGCTTTATATAGTTGAATATACAAA
CTCCATAATGTAGCATAATTCTGTTCTACTACTAGAATTTAAGTATTTGTTCTATATTTACACAATTAGTCATCTATAAAACAAACAGTC
TTAATCAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
skt2	inward rectifying potassium channel

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E624237
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P89862 (840 Aa)

MEVKYSSHGFYNRNMSDGDGEKIQTKEDMYNNNNNNERGGNSGLGNMSFHNLSKLILPPLGSSGYNQNQTDXAQRQHYLTYHFNIQVLGD
TNGAIGGILCMGIPFEIAFMNLNPNKKLYIADNIVNLVFAADIILTFSVAYIDSTSQLLVRDRRKIATRYVSTWFLMDVASTIPFDLLAM
LFTGKHQVGISYSVLGILRFWRLRKVKQFFTRLEKDMRFSYFWIRCARLLFVTLFSVHCAGCLYYLLADRYPHQGNTWLGSVNPKFRETS
LWIRYISAIYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYIIGNMTNLVVEGTSPPWNLEIAYSSFKLRESKSLASKTEGAN
TGLHVLKIQGRELKPTTTNEQLPKTICKSIRHHLFLPTVEKVYLFKGISREILLHLVADMKAEYIPPREDVIMQNESPDEVYIIVSGEVE
MIDSEMENEQIVWTLRCGDMFEKLGPFVEASELHVSDKDTFTTLKDKNKFFDEAMKSRQEDNVTMMKNFLQHHKKLKDLRLTDLFLDVGD
EDSDPNMSINLLTVASTGNAAFLDELLKARLDPNICDSKGKTPLHIAASKGHEECVMVLLRHGCNIHLQDVNGDTALWEAIAAKQHPIFE
ILYHWACISDPYVSGDLLCKAARRNELTIMKELLKHGLLVNSNDRHRSTAIHVAIEENHLEMVKLLLLNGDEIDDTLKDKLSSMNLSEML
QKQDVGHRIIISDTMDEVDHKEHEQEQKYDFESHTDQCAFRVSIYRGHPEFRRRTQCNELGRLIKLPDSLAKLKGIAGQKFGFEAKDALV
TNEEGAEIDSVEVIRDNDKLYIVEYTNSIM

SignalP predicts non-secretion with a score of 0.026

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P233684 (858 Aa)

CIILFLFFHYIINMMNMEVKYSSHGFYNRNMSDGDGEKIQTKEDMYNNNNNNERGGNSGLGNMSFHNLSKLILPPLGSSGYNQNQTDLHK
GNTISPITSTYRCWETLMVLLVAYCAWVCPFEIAFMNLNPNKKLYIADNIVNLVFAADIILTFSVAYIDSTSQLLVRDRRKIATRYVSTW
FLMDVASTIPFDLLAMLFTGKHQVGISYSVLGILRFWRLRKVKQFFTRLEKDMRFSYFWIRCARLLFVTLFSVHCAGCLYYLLADRYPHQ
GNTWLGSVNPKFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYIIGNMTNLVVEGTSRTMEFRNSIQSA
SNFVSRNHLPPRLKEQILAYMCLRFKAESLNQQQLIEQLPKTICKSIRHHLFLPTVEKVYLFKGISREILLHLVADMKAEYIPPREDVIM
QNESPDEVYIIVSGEVEMIDSEMENEQIVWTLRCGDMFGEVGAFCCRPQSYTYRTRTLSQLLKIRTSSLIEAMKSRQEDNVTMMKNFLQH
HKKLKDLRLTDLFLDVGDEDSDPNMSINLLTVASTGNAAFLDELLKARLDPNICDSKGKTPLHIAASKGHEECVMVLLRHGCNIHLQDVN
GDTALWEAIAAKQHPIFEILYHWACISDPYVSGDLLCKAARRNELTIMKELLKHGLLVNSNDRHRSTAIHVAIEENHLEMVKLLLLNGDE
IDDTLKDKLSSMNLSEMLQKQDVGHRIIISDTMDEVDHKEHEQEQKYDFESHTDQCAFRVSIYRGHPEFRRRTQCNELGRLIKLPDSLAK
LKGIAGQKFGFEAKDALVTNEEGAEIDSVEVIRDNDKLYIVEYTNSIM

SignalP predicts secretion with a score of 0.47

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	19	ANK	371
2	22407	Ion_trans K+channel_pore cNMP_binding EAG_ELK_ERG	31
5	56657	Ion_trans K+channel_pore cNMP_binding EAG_ELK_ERG	27
1.1	101379	Ankyrin	460
2	118883	Ion transport - Molecular Function: ion channel activity (GO:0005216) - Biological Process: ion transport (GO:0006811) - Cellular Component: membrane (GO:0016020) K+ channel pore region - Molecular Function: potassium channel activity (GO:0005267) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020) Cyclic nucleotide-binding EAG/ELK/ERG potassium channel - Molecular Function: voltage-gated potassium channel activity (GO:0005249) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020)	27
5	129420	Ion transport - Molecular Function: ion channel activity (GO:0005216) - Biological Process: ion transport (GO:0006811) - Cellular Component: membrane (GO:0016020) K+ channel pore region - Molecular Function: potassium channel activity (GO:0005267) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020) Cyclic nucleotide-binding EAG/ELK/ERG potassium channel - Molecular Function: voltage-gated potassium channel activity (GO:0005249) - Biological Process: potassium ion transport (GO:0006813) - Cellular Component: membrane (GO:0016020)	22

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer