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Unigene SGN-U293011

Unigene Basic Information

Unigene ID:	SGN-U293011
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	293011
mRNA sequence:	Length: 215 bp

>SGN-U293011 Solanum tuberosum #4 (1 members)
CCTCGTGCCGGTTGAGTGGTTAAGGAGGAGGAGCAAGGACAATATTGGCTCTATTAGCTTAAATGTGTTCATTTATAACAGTCTTTTAGG
CACCATAAAAGAGGCGGGGAAGTATGATTTTGTTGATAAAGTCATGGATGATATGGTCTCAGAAGGAGTGCAGCCTAATGTTGTGACGTA
CAATACTTTAATGAGAATTTATATAGAACAAGGTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E487937
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|225452238\|ref\|XP_002268821.1\|	88.2	3e-16	60.29	204 bp (94.9%)	3
Description:	PREDICTED: hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At3G46610.1	73.9	2e-14	50	204 bp (94.9%)	3
Description:	pentatricopeptide (PPR) repeat-containing protein \| chr3:17171209-17173206 REVERSE
swissprot	blastx	Q9SNB7	73.9	3e-13	50	204 bp (94.9%)	3
Description:	Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P91258 (72 Aa)

LVPVEWLRRRSKDNIGSISLNVFIYNSLLGTIKEAGKYDFVDKVMDDMVSEGVQPNVVTYNTLMRIYIEQGX

SignalP predicts non-secretion with a score of 0.142

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P235206 (71 Aa)

LVPVEWLRRRSKDNIGSISLNVFIYNSLLGTIKEAGKYDFVDKVMDDMVSEGVQPNVVTYNTLMRIYIEQG

SignalP predicts non-secretion with a score of 0.142

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	5	PPR	911
2	21975	PPR	410
5	56257	PPR	357
1.1	101364	Pentatricopeptide repeat	1008
2	118411	Pentatricopeptide repeat	364
5	140021		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264398	Solanum tuberosum #3

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