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Unigene SGN-U297327

Unigene Basic Information

Unigene ID:	SGN-U297327
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	297327
mRNA sequence:	Length: 301 bp

>SGN-U297327 Solanum tuberosum #4 (1 members)
CAAAAACTTTATATTATAATTCTTCAATTCTAACAAATGGGTGAAGAAACCAAAGTTGAAGGAGCAGAGAAAAAGAGTGATGGCTCAATT
GTTTTAAAGCTGGATTTGCATTGTGAAGGTTGTGCACAAAAAGTCAGACGATTCATTCGCCATACTCATGGTGTGGAAAAAGTGAAATCA
GACTGTGAAACTGGAAAATTGACGGTTAAAGGTGACGTGGACCCTTCATGGCTCCGGGAAAGAGTGGAGATCAAAACCAAAAAGAAGGTC
GACCTTATATCATCGCCGCCCAAAAAGGATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E403407
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255556920\|ref\|XP_002519493.1\|	97.1	6e-19	57.32	240 bp (79.7%)	2
Description:	metal ion binding protein, putative [Ricinus communis] >gi223541356\|gb\|EEF42907.1\| metal ion bi…
arabidopsis	blastx	At5G60800.1	94.4	1e-20	51.52	264 bp (87.7%)	2
Description:	heavy-metal-associated domain-containing protein \| chr5:24478342-24479690 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P239629 (89 Aa)

QMGEETKVEGAEKKSDGSIVLKLDLHCEGCAQKVRRFIRHTHGVEKVKSDCETGKLTVKGDVDPSWLRERVEIKTKKKVDLISSPPKKD

SignalP predicts non-secretion with a score of 0.076

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P95263 (89 Aa)

MGEETKVEGAEKKSDGSIVLKLDLHCEGCAQKVRRFIRHTHGVEKVKSDCETGKLTVKGDVDPSWLRERVEIKTKKKVDLISSPPKKDX

SignalP predicts non-secretion with a score of 0.079

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	59	HeavyMe_transpt	218
2	22093	HeavyMe_transpt	71
5	57181	Metal_bind HeavyMe_transpt	16
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118800	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	29
5	130466	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	10

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U263656	Solanum tuberosum #3

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