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Unigene SGN-U298146

Unigene Basic Information

Unigene ID:	SGN-U298146
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298146
mRNA sequence:	Length: 231 bp

>SGN-U298146 Solanum tuberosum #4 (1 members)
CAAACTATGACAGGTTCAAGCAAGGATTCGAAGAAGAGAACAAAGATAGTGCTGAGGCAAAAACCGCACAAGATGATGGATCATCATCGC
CTGTTGAACCGGAGATTGTCCCAGTATAGTTGTGGTTTTTAACTGAGAATGCAGGGTAGCGAGTTTCTGGTATTAACGTTCAATTTTAGA
TTGTTGTAAAAATCGTTAGTCATGATATTAATAACACAATTATGGTTTCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E609005
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P240462 (54 Aa)

TLIPETRYPAFSVKNHNYTGTISGSTGDDDPSSCAVFASALSLFSSSNPCLNLS

SignalP predicts non-secretion with a score of 0.074

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P96018 (44 Aa)

NYDRFKQGFEEENKDSAEAKTAQDDGSSSPVEPEIVPXIVVVFN

SignalP predicts non-secretion with a score of 0.015

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	21987	26S_p45 AAA_ATPase_centr	260
5	96148		1
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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