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This unigene is from an out-of-date build, Coffea canephora #1
It has been superseded by SGN-U620812 in the current build, Coffea canephora #3

Unigene SGN-U305334

Unigene Basic Information

Unigene ID:	SGN-U305334
Unigene Build:	Coffea canephora #1
Date:	2005-04-24
Organism:	C.canephora
Alternative ID:	127745
mRNA sequence:	Length: 122 bp

>SGN-U305334 Coffea canephora #1 (1 members)
GGATTAATTCTGTCATTCTTGCCATAATTTTCTCCAAAAATTCACATCGTTGAATAGTTGATCTATTCATGGGAAGGGAAAAGGACTTGA
AAAATGGGCATCCGGGTAGGTGATTCAATGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccwc22w	Whole Cherry 22 week after pollination	11656	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E675717
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|51971128\|dbj\|BAD44256.1\|	74.71	1.6e-12	43.43	294 bp (241.0%)	3
Description:	unknown protein [Arabidopsis thaliana]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003723 RNA binding

Protein prediction analysis (1)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P105112 (170 Aa)

INSVILAKFSPKIHIVXIVDLFMGREKDLKNGHPGGDSMEICCHEDGFLGSYYQAKIIATRGKNKFLVEYKTLLKEDNEYDWLQDVVEAS
TVWHLPLQTNVSEFHGLEKVDAFDNDGWWVGTIXGLELATNTSVFRGDQGMSFCIRLAASKFIGNTKMAIGXPASNRADT

SignalP predicts non-secretion with a score of 0.192

IPR008395 Agenet

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	299	Agenet	53
2	29507		2
5	62104		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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