Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580275 in the current build, Tomato 200607 #2

Unigene SGN-U312332

Unigene Basic Information

Unigene ID:	SGN-U312332
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312332
mRNA sequence:	Length: 1880 bp

>SGN-U312332 Tomato 200607 #1 (39 members)
GATACGGGAAATTCCAATTGCTGCGCTATATTCTTCTTTCAGTGCCAAACCCAATTAGTCCGGACGACGCAAATCACAGCGATTTCTTCA
AAACCTATCTGGAAAAATGGCATCAGTTGATGTTGAGAAGAGGAGGAGCGATATGGAGAGAGAGGAAGCCTGTTCGGCCAAACCAACAAA
GCAAGGGGAAGGGCTGAGACAGTACTATATGCAGCACATCCATGATCTCCAGCTCCAAGTCCGCGTAAAGACTCACAATCTTAATCGCCT
TGAAGCCCAGAGGAACGAACTCAATTCTAAAGTGAGAATGCTAAAAGAGGAATTACAATTGCTTCAGGAGCCTGGATCATATGTTGGTGA
AGTTGTTAAAGTAATGGGGAAGTCAAAGGTTCTAGTCAAAGTTCATCCTGAAGGCAAATATGTTGTTGATATTGGCAAAAACATTGACAT
TACAAAGATCACTCCATCAACTAGAGTTGCCCTGCGCAATGATAGCTATGTTCTTCATCTAATTTTGCCCAGCAAAGTTGATCCATTGGT
CAACCTCATGAAAGTTGAGAAAGTGCCAGATTCCACTTATGACATGATTGGTGGTCTTGACCAGCAGATCAAGGAGATTAAAGAGGTTAT
TGAGCTTCCTATAAAGCATCCTGAGTTATTTGAGTCTCTTGGAATAGCTCAGCCAAAGGGAGTGCTGCTCTATGGACCTCCAGGAACTGG
GAAAACATTGTTGGCTAGGGCAGTTGCACATCACACTGATTGTACCTTCATTAGGGTCTCTGGTTCCGAACTAGTGCAGAAATATATTGG
AGAAGGTTCTCGAATGGTGAGAGAACTTTTTGTTATGGCCAGGGAACATGCTCCTTCTATCATTTTTATGGATGAGATAGACAGCATTGG
ATCTGCTAGGATGGAATCAGGGAGTGGCAATGGTGACAGTGAAGTCCAGAGGACAATGCTTGAACTTCTCAATCAGCTTGATGGATTTGA
GGCATCAAACAAAATCAAGGTTCTGATGGCCACAAACCGTATAGATATTCTAGATCAAGCACTCCTTAGACCAGGAAGGATAGACAGGAA
GATTGAATTCCCAAATCCCAATGAAGAGTCTCGTCAGGACATTTTAAAGATTCATTCGAGGAAGATGAACTTGATGCGGGGGATTGATTT
GAAGAAGATTGCAGAGAAGATGAGTGGTGCTTCTGGGGCTGAACTTAAGGCTGTATGTACAGAAGCAGGGATGTTTGCTCTAAGAGAGAG
GAGGGTGCATGTGACGCAAGAAGATTTTGAGATGGCTGTTGCTAAAGTAATGAAGAAAGAGACTGAGAAGAACATGTCACTGCGAAAGCT
GTGGAAGTAGATGATGGTCGATACGAAGGATCTGAAACGCATACACATCTGAGTTGATTGTCTATAATTACCATTGTTCTTGGAACTTTT
ATTTGACCCCAGGAGCTTACGACTTGCCCTTTAGTATTTTCATGTTTCTCAGTAAGCTATTTCGTTTTCTTTGGCTGTTTGGGGCGTCCG
CGTGGCTGATTCAGATTTTTTCTGTGTTTTTTCCTGCGGCTTTAGTATTTGATACTCTGGCTTTTAGCTTGTATTCTTGTTTATTGACAT
GCTCTACTTCTTTTTCGGCTCTAACTTAAAAGCCCTGCCTAGGAGTTTTACTTGTACTCTTTCAATTTTAAGTTACATGAAACGTGTTTT
TTTTCATTATTTAATTTTAAATTTTCATATTTTAGGCCACAAAATTAAAGGACAAAAAAAAAAAAAAAAACCTCGACCCTCGGGCCAATT
TCGGCAAAAGGATGGAATTTCCCTCCCCCCCCCTCAAGGGGGGCCCTGAAATCCCTTACAAAAGGGGGGAGGGCCGCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129002	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	70

Preceding Unigenes (1)

Unigene	Build
SGN-U213988	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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