Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577907, SGN-U589904, and SGN-U593720 in the current build, Tomato 200607 #2

Unigene SGN-U312362

Unigene Basic Information

Unigene ID:	SGN-U312362
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312362
mRNA sequence:	Length: 1582 bp

>SGN-U312362 Tomato 200607 #1 (89 members)
TCGTGTTTATTTTTTTTTGAAAATTGACAGTATAATAAAAGCTTAGTGCATCGACCCGATCTTTTCGACTCCCAAATTAGTTAAGTCCAC
GCGCTACACGTCTTGGTAAACTTCTTCGCCCCTTCTCTCTCCCTTCCCACTCTCTTCTTCTCCATCTCACCTATAACTTCTCCAGTTTTA
CATATATATATATACCTATAACTTCACCAAAATCATCTAATTCTCTCTGAAATTCAATTTTCTCATCTGGGTCTGTCTTGTTTTTGATCA
TTCTTGAGTTTTTCTCTTGTGGGTATTCCTTGATTTTGCTCAAAACCGTCAAATTTTGAATCTTTTTGTTGTGGGTCTGTGTCGTTTTGC
TCAAAGTTTGAATCTTTCTATTGTGGGTGTCTCTTGAAACCCTTGAAAAATGGTGCGGTGTAGTAACAATTTAGTGGGGATTCTGAATAT
AGTGACACTTTTGCTGTCGATCCCAATTATAGGAGGAGGGATATGGTTGTCAAAACAAGCAAATACAGAGTGTGAGAGGTTTCTTGAAAA
GCCAGTAATAGCAATAGGTGTTTTTATATTGCTTGTTTCATTGGCTGGTATAATTGGATCTTGCTGTAGAGTTACTTGGTTACTTTGGGT
TTATCTACTTGTTATGTTTTTGTTGATTTTGTTGCTTTTCTGTTTCACAATCTTTGCTTTTGTGGTGACTAATAAGGGTGCTGGTGAAAC
AATTTCTGGTAGAGGGTATAAGGAGTATAGGTTTGGGGATTACTCTAATTGGTTGCAGAAAAGAGTTGATAAGCATTGGAATAGAATTCA
TAGTTGTTTGCAGGATAGTAAGATTTGTGATACTTTGATTCAGGAATCAAATACTAAAGCTGATGATTTCTTCAAGAAACATCTATCTGC
TCTTCAGTCTGGTTGCTGCAAGCCATCAAATGACTGTAACTTCCAGTACGTGAGCCCAACAAACTGGACAAGATCATCGACCTCATCCAC
TACCAATCCAGACTGTGCTACATGGAGCAACGAGTCAAATTTATTGTGCTATGGCTGCCAATCCTGCAAAGCTGGGCTGCTAGACAACAT
CAAAAGTGACTGGAAGAGGGTAGCTGTGCTCAACATCATTTTCCTCATCTTCCTCATCATCGTCTACTCTATCGGATGTTGTGCTTTCAG
GAACAACCGAGAGGACAATGCTTGGAAGCGTTATCCTTAAACACTCTCTGTTGAGTCTCGACTGCTTTATGTTGCGTATCGTATTAGACT
ATAGATCACTTAGTATGAGTTTATGCTCTTTCTTGTACAGAGTGTATTTCTTCTGCTAGACAATTTACTTGTGGCTTTTGGATATATGTG
AATTCCTATTATTGAATTCTTTGTTTAGAATTGTCTTCTTGATTAGATGGAGTCTTTCATCTCCATTTTTTTCTGTTGAACAAATTTGTG
TTAGATTTGTATGGTGGAGAATTTTGCATTTAAAAAAAAAAAAAAAAAACTCGTGTTTGGTATCTGTATTGAGGTTTGATTAAGTTTAGA
AAAATTCATATCTGAAAGTAAAGATGTGCACTTCTTTGATTGGAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	10
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	19
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	10
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (89)

Alignment image suppressed for unigene with 89 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (2)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102128	Nitrogen-fixing NifU C-terminal	21
2	125450		3

Preceding Unigenes (1)

Unigene	Build
SGN-U212812	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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