Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579113 in the current build, Tomato 200607 #2

Unigene SGN-U312436

Unigene Basic Information

Unigene ID:	SGN-U312436
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312436
mRNA sequence:	Length: 1219 bp

>SGN-U312436 Tomato 200607 #1 (213 members)
GAAAGCAACAAAAAAGCTTCAGCAAATTCAAAAAAAAAAAGTAAAAAAAAATGGCCACTTGTGCAATTCAACAATCAGCCTTTGTTGGTC
AAGCAGTTGGTAAATCTCAAAATGAATTTATTAGGAAAGTTGGCAACTTCGGTGAAGGCCGTATTACCATGAGACGCACTGTTAAAAGCG
CTCCTCAAAGCATCTGGTACGGAGAAGACCGTCCTAAGTACTTGGGCCCATTTTCGGAGCAAACACCATCCTACTTAACTGGGGAATTTC
CAGGTGATTACGGATGGGACACTGCTGGACTCTCAGCTGACCCCGAGACATTTGCTAGAAACCGTGAGCTTGAGGTGATTCATTGCCGTT
GGGCTATGCTTGGTGCTTTAGGTTGTGTTTTCCCCGAAATCCTTTCGAAGAACGGTGTTAAATTCGGTGAAGCTGTTTGGTTCAAGGCTG
GATCTCAAATTTTCTCCGAAGGTGGGCTTGACTACCTTGGAAACCCAAACCTTGTCCATGCTCAAAGCATTCTTGCTATTTGGGCTTGCC
AAGTTGTTCTTATGGGCTTTGTTGAAGGATACAGAGTTGGTGGAGGCCCACTTGGTGAGGGCCTTGACAAGATCTACCCAGGAGGTGCCT
TTGACCCACTTGGCCTTGCTGATGATCCTGAGGCTTTTGCTGAATTGAAGGTGAAGGAAATTAAGAATGGACGTTTAGCTATGTTTTCTA
TGTTTGGATTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCAATTGAGAACCTCTCTGACCACATTAACGACCCTGTGGCTAACAACG
CTTGGGCTTACGCCACAAACTTTGTACCCGGAAAGTGAAAGTAATTTGGGCTAATTAATGAAAGTTTTATGCTTGTGAAAAAAAAAAAAA
AAAAAAATTTGATTATATTTCTCAGTGGTGTTCCTTTTTTTACCCTAAGTTGCTTAGGGGAGAGACGGGATATATAATGTTTTTTTTCAT
AAAAAAAAAAAAAAAACGTTATAGAATTGACGGTGGAATGAATAATCCCCAAGCTAACTAATACCAGCTCTAACCAAATGAAAGATTAAT
AATTCAGCATTTGTTTCAAAATTTATTATTATCCCTCGTACTAGACGACTTGTTTACACAGTGACCTTTCAAACTAGATTGAATATAATT
ATTGTATATTTTTTTAAAAAAAATAAAATCGAGTAAGTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cab4a	chlorophyll a/b-binding protein

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	20
Solanum lycopersicum	LB	Leaf Mature leaves	3316	8
Solanum lycopersicum	LC	Leaf Mature leaves	5712	17
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	36
Solanum lycopersicum	cLER	leaf 4 weeks	5127	16
Solanum lycopersicum	cLES	leaf 4 weeks	5243	10
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	42
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	15
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	16
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (213)

Alignment image suppressed for unigene with 213 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 3 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	128943	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	163

Preceding Unigenes (1)

Unigene	Build
SGN-U212863	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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