Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579802 in the current build, Tomato 200607 #2

Unigene SGN-U312554

Unigene Basic Information

Unigene ID:	SGN-U312554
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312554
mRNA sequence:	Length: 2553 bp

>SGN-U312554 Tomato 200607 #1 (44 members)
AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAG
TTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTT
TGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAA
ATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCT
TGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAA
TATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGC
TGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGT
AATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTT
GTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGG
GCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGT
TGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGAT
ACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTT
CTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGC
ACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGAC
TATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGA
TTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTGCA
TTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTT
GATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGC
TGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGAGGCTGGCCATGCCTTGGTTGGTGCACT
TATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAG
ACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGAGTTGCTGAGGAGGTTATTTTTGG
ACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAA
AAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGATGTCAACCCAGAAAGACTACTCCATGGCAAC
AGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCT
ACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATA
CATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCAT
ATTTTGACAAAAAAAAAAAAAAAAAAAAATCCACCACCTTGCTGGGGGGGCCCGAAGCCCAATTTGCCATATGAGGGGGACTATAAAATN
NCCGNCGTTACCGTTGATCTGCTTGACCTTTTTGAGAGGAGTGTCGCTTGCTTAATTTTTTGCATTATCTGGTTTTAGCCCTTTTATCTT
GAAACATTCAGCTGTTTACAATTTTGAACAACT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY334306	FtsH-like protein precursor

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 10 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129073	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	47

Preceding Unigenes (2)

Unigene	Build
SGN-U216579	Lycopersicon Combined #3
SGN-U219951	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer