Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579015 and SGN-U590013 in the current build, Tomato 200607 #2

Unigene SGN-U312604

Unigene Basic Information

Unigene ID:	SGN-U312604
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312604
mRNA sequence:	Length: 2733 bp

>SGN-U312604 Tomato 200607 #1 (202 members)
AAACCCATTTAGTAATTTGTATAAGGAAAAAAAAACCCTTTCCAAATTATTCCTTCTTCTGCAATTGTGCAGTTTAAAGCTGCCCTATCT
TTTTCTCCTACACAAACCCCCTTTCTCCTTTTCGGCGTTGCCGGCGGCGATCCTTTGTCTCGTCGGATCTCCGACCTATCCACCTTCCCT
CTCCTCTCTTTATCATCTATCCTACTAAAAAATCGAAAAAAATTATCTATCGGAAAAACACATCAAAATTTTCTAGGGTTTCAGTATTTT
TCTACTTCTATCAATTTCCAGTTCGATAGACGTCGGCTTTTTGAATTTATATATATTCTGAGATTTTGTATCTGCGAATAAAAAGAGGAG
AGGGAAGTCAGAAAAATAAAATCACAAAAAAAATCGGAAAACAGAAAATTATTTTTTTTGTTTTTGTGTTGAATTTTGATGGCGCAGGTT
CAAGTGCAGCCACAGGGTGCGAATGCTAGTGGTGTCAATCAGTTTGTGACGTCTCTGTACGTGGGTGACCTTGATGTCAATGTGACCGAT
TCACAGCTGTATGATCTGTTCAATCAGCTAGGACAAGTGGTTTCGGTTAGGGTTTGCAGGGATTTGACTACCCAGAGGTCGCTCGGTTAT
GGCTATGTCAATTATGGGAACCCACAAGATGCTGCAAGGGCTTTGGAAGTGCTAAACTTTACTCCTCTCAGTGGAAAGCCCATAAGGATA
ATGTACTCAAACCGAGACCCAACTGTTCGAAGAAGTGGCACTGCAAACATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCA
CTACATGATACCTTTTCTGCATTCGGCAATATTCTGTCTTGTAAGGTAGCTGTGGATTCATCAGGTCAGTCCAAGGGGTATGGGTTTGTG
CAGTATGACAGTGAGGATGCTGCCCAAAAAGCTATTGAGAAGCTTAATGGTATGCTGCTGAATGACAAGCAAGTATATGTTGGACCCTTT
GTCCGGAAGCAAGAAAGAGATATGGCTGTAGATAAGACAAGATTTACCAATGTCTTTGTGAAAAATTTATCTGAAGCGACATCAGAAGAA
GATCTCAAGAAAGCCTTTGATGAATTTGGTGCCATTACTAGCATTGCAATTATGAAGGATGAAGATGGAAAATCTCGGTCCTTTGGATTT
GTTAACTTTGAAAATGCTGAAGATGCTGCGAGAGCAGTTGAAGCTTTGAATGGCCACAAATTTGATAACAAAGAATGGTTTGTAGGAAGA
GCTCAGAAGAAATCAGAGAGGGAAATGGAATTGAAAAATCGATATGAGCAAAGTGCCAAGGAGGCAGTTGATAAATCACAAGGCTTGAAT
CTATACATAAAAAATTTAGATGACAGCATTAGTGATGACAAGCTCAAGGATATGTTCTCTACATATGGTACAATCACTTCATGCAAGGTT
ATGAGAGATCCTAGTGGAGTAAGCAAAGGATCAGGATTTGTTGCATTCTCATCTCCCGAAGAGGCTTCAAGAGCGCTCGCAGAGATGAAT
GGAAAGATGATTGTTAGCAAACCTCTGTATGTTGCCCTTGCGCAACGCAAGGAAGAGAGAAGAGCAAGGTTACAGGCTCAGTTTTCTCAG
ATGCGTCCAATTGGAATGGCATCTACAGTTGCACCTAGAATGCCTATGTATCCTCCTGGCGGTCCTGGTCTAGGTCAACAAATATTTTAC
GGCCAGCCACAACCAGCTATGCTTCCCCCACAAGCTGGTTTTGGATATCAGCAGCAGCTTGTACCTGGAATGAGGCCTGGTGGGGGGCCT
ATGCCGAATTTCTTTATGCCTATGGTTCAGCAAGGGCAGCAAGGTCAACGTCCGGGTGGCCGACGTGGAGGTGCTGTTCCATTGCAGCAA
GGACAGCAGCCAGTTCCGCTGATGCAGCAACAGATGTTTCCGAGGGGGCGTGGATATCGATATCCTCCAGGACGTGGCATTCCTGATGTT
GGCTTTCCAGGAGTAGGTGGTGGCATGTTCTCTGTCCCATATGACATGGGTGGCATGCCTGTGCGTGCTGCAGGAATTGCCCAACCAATT
CCGGTAGGGGCTTTGGCTACTGCTCTGGCTAATGCTTCTCCAACAGAGCAAAGGACGATGCTAGGTGAAAATCTGTACCCCTTGGTCGAA
CAGCTTGAACCAGAAACAGCAGCGAAGGTAACTGGCATGCTTTTGGAGATGGATCAGACAGAGGTATTGCACTTGCTTGAGTCTCCTGAG
GCTCTGAAAGCCAAGGTTGCAGAGGCGATGGATGTTCTGAGGAATGTTCCTCAGCAGCAGGCCAGTAATGCTGCTGATCAGTTGGCTTCA
TTGTCACTAAATGATGGTCTGGTTTCTTGAGTTCTTACGATATCCCATGCTCGTCGCCATCAATTATTTGTTCTTTTCTAGTGTGCTTTT
AATTCTGGATTTTCTTCACCCAGAAAATCTGATTTCTCTTAAAAGACATTGTTAGACTCAGGTGTTTGACTATCAGATATTGTTGGGTTG
CATTTTGGTTCAGTTTGGAATTTGTTGGACATCTAACTTGTTTATCAGAACCTTTGCGCTGGTATTGTTAATTATGATTTTTCTTGTTTA
TAAAAAAAAAAAAAAAATGGCTGTATTTTTTTGGTAAAAAAAAAAAAAAAAAAAGTGTAGGGGTGGGTTTCTGGTTGCATGTTTTGAACC
TGTTTTTTAAAGGATGTCTCGTGGATGTTTAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	2
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	19
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	16
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	27
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	10
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	13
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	12
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	8
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (202)

Alignment image suppressed for unigene with 202 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 4 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118573	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	50
5	129237	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	29

Preceding Unigenes (1)

Unigene	Build
SGN-U212727	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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