Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577209, SGN-U578861, SGN-U578974, SGN-U590877, and SGN-U593428 in the current build, Tomato 200607 #2

Unigene SGN-U312624

Unigene Basic Information

Unigene ID:	SGN-U312624
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312624
mRNA sequence:	Length: 1624 bp

>SGN-U312624 Tomato 200607 #1 (174 members)
AATCTCACTCACCAAGCCCTTTCTCTCTGTTTTCCTCTTCATTTCCCTAAAAACACCGTCAAGAACCTCTCTTCTCCTCTTCTCGCCGCA
ACTTTCAATCGTTTCTATTGACGTAGTTCAACAGATCGAAAGATGTTTGGAAGAGCACCGAAGAAGAGCGATAATACAAAGTATTATGAG
ATCTTAGGAGTTCCTAAGGCTGCTTCTCAGGAAGATCTCAAAAAGGCTTATCGTAAAGCTGCTATCAAAAATCACCCTGATAAGGGAGGC
GATCCTGAGAAGTTTAAAGAGCTTGCTCAAGCTTATGAGGTCTTGAGTGACCCGGAGAAGCGTGAGATATATGATCAGTATGGAGAGGAT
GCTCTAAAGGAAGGAATGGGTGGTGGAGGTGGTGGACATGACCCATTTGATATATTTCAATCATTCTTCGGTGGTGGTGGAAACCCCTTT
GGTGGTGGTGGAAGCAGCAGAGCTCGTAGACAAAGAAGAGGAGAGGATGTTATCCACCCGCTCAAGGTTTCTTTAGAGGATCTTTACAAT
GGGACATCAAAGAAGCTTTCACTATCTCGCAATGTGTTGTGCTCAAAGTGCAAGGGTAAAGGGTCCAAGTCAGGTGCTTCAATGAAATGT
TCTGGCTGTCAAGGGTCTGGAATGAAAGTTTCTATCAGACAGCTCGGTCCATCCATGATCCAGCAGATGCAGCACCCTTGCAATGAGTGT
AAGGGTACTGGTGAGATGATCAGTGACAAAGATAGGTGCCCTCAGTGTAAGGGTGAGAAGGTTGTGCAGGAGAAGAAGGTGTTGGAAGTT
CACGTGGAGAAGGGTATGCAGAATGGGCAGAAAGTAACATTTCCAGGCGAGGCAGATGAAGCGCCAGATACCATCACTGGAGACATTGTT
TTTGTCTTGCAACAAAAGGAACATCCTAAGTTCAAGCGAAAGGGAGATGATCTTTTTGTTGAGCACACATTGACCTTGACTGAGGCCCTA
TGTGGTTTCCAGTTTGTCTTGACTCACCTAGACAACAGACAGCTGCTCATTAAGTCCCAACCTGGCGAAGTTGTCAAGCCTGATCAGTTT
AAGGCTATCAACGATGAAGGAATGCCGATGTACCAAAGGCCGTTCATGAGAGGTAAAATGTACATTCACTTCACTGTTGATTTCCCCGAG
TCATTAACAGCAGAGCAGTGCAAGAACCTTGAGGCTGTGCTGCCTCCAAAACCCAAATTGCAAGTATCTGATATGGAATTAGACGAGTGT
GAGGAGACTACTTTGCACGATGTGAACATTGAGGATGAGATGCGAAGGAAGCAGCAAGCTGCCCAAGAGGCATATGACGAAGATGATGAT
ATGCCTGGTGGTGCACAGAGAGTCCAATGTGCACAGCAGTAATTTGGCATTTGCTATCTTGTGATAAGTGGGTAGGTTACTAGTAAAAGG
ATATGGATATTTTTTCTTATGCAGACCGACACTAAGTGTGCTTACATGTTTACGCAATTTGAATTTGTTTTGATCTGTTATGTCATTCAA
TAACCCTTTTTAATTCCAAGTCCAATTTGAAAAACAAAAAAAAAAAAAAAAAAGAAAAATTGCTGGATAAAAAAAAAAAAAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	30
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	7
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	9
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	17
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	9
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (174)

Alignment image suppressed for unigene with 174 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118427	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	212
5	128955	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	121

Preceding Unigenes (1)

Unigene	Build
SGN-U212653	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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