Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578090 and SGN-U590525 in the current build, Tomato 200607 #2

Unigene SGN-U312628

Unigene Basic Information

Unigene ID:	SGN-U312628
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312628
mRNA sequence:	Length: 1687 bp

>SGN-U312628 Tomato 200607 #1 (197 members)
AAAGACCAAAGATGTCTTTATGGCGGAGACTGGTATATATTCCCCAATTCCCACCAACAAATCCTGACCGTTCAATTCTCAACCTCACAA
TAAAACCACAGATCTCATACTCAACGGCCGAATTCTCTCTCCCTTTTCCTCCATACTCGAACAAGCCAACAAACTCTTCTTCTCGCCGCG
CTTTATCATCGTTCAATTTTGACTAAATTAAGCGATCGAAGATGTTTGGGAGGGCACCGAAAAAGAGCGACAACACGAAGTACTATGAAA
TCTTAGGTGTTCCTAAAACTGCTGCACAAGAAGATCTCAAGAAAGCTTACCGTAAAGCTGCTATTAAGAATCATCCTGATAAGGGAGGTG
ATCCTGAAAAGTTTAAAGAGCTTGCACAAGCTTATGAGGTTCTGAGTGATCCCGAGAAGCGTGAGATATATGATCAGTATGGAGAAGATG
CTCTCAAGGAAGGAATGGGCGGTGGAGGTGGTGGACACGACCCATTTGATATTTTCTCATCTTTCTTTGGTGGCAGCCCATTTGGTGGAG
GTGGTGGAAGCAGCAGAGGAAGAAGACAAAGAAGAGGAGAGGATGTTGTCCACCCTCTCAAAGTTTCTCTGGAGGATCTGTACAATGGAA
CATCAAAGAAGCTTTCACTATCTCGCAATGTATTGTGCCCGAAGTGCAAGGGGAAAGGATCTAAATCAGGTGCTTCAATGAAGTGTTCTG
GCTGTCAAGGGTCTGGAATGAAAGTCACTATTAGACAACTTGGCCCATCCATGATCCAGCAGATGCAGCACCCTTGCAACGAGTGTAAGG
GTACTGGTGAGATGATCAATGATAAAGATAGGTGTGGGCAGTGTAAAGGTGAGAAGGTTGTGCAGGAGAAGAAGGTGTTGGAAGTTGTTG
TCGAGAAGGGTATGCAGAATGGACAGAAGATCACATTCCCGGGCGAGGCTGATGAAGCACCTGATACCGTCACTGGGGACATAGTTTTTG
TCTTGCAACAGAAGGAACATCCCAAGTTTAAGCGGAAGGGAGATGATCTCTTTGTAGAGCACACCTTGAGCTTAACCGAGGCCCTGTGTG
GTTTCCAGTTCATCTTGACTCACCTAGATACCAGGCAGCTGATCATCAAGTCCCAACCCGGAGAAGTTGTCAAACCTGATCAATTTAAGG
CCATAAATGATGAAGGAATGCCGATGTACCAAAGGCCATTTATGAGAGGAAAACTATACATTCACTTCACCGTAGAATTCCCCGACACAT
TATCCCTCGAGCAATGCAAGAACCTTGAAGCAGTATTGCCACCAAAACCCAAAACCCAAATGACTGATATGGAATTGGACGAGTGCGAGG
AGACCACGTTACATGATGTTAACATCGAAGAGGAGATGCGTAGGAAGCAGCAACAGGCCCAAGAGGCATACGACGAAGACGATGAAGACA
TGCATGGTGGTGCACAGAGAGTTCAATGTGCACAACAGTAATTTGGTAACACGGAATTAACGTCACGATTCAACTCTTGTTTTCACGTAT
TTGTAATGACATTACTAGCTTATAAATTTCGAGTTTTGAATTTGCTAATCTATACTGTTAACGTTACAAACATATTATTGAAATATTTTG
TCGAAGAATTGATATAAAGAGGAAATAAATTGGTGTGCTTAAAAAAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	38
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	9
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	12
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	11
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	7
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	9
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	10
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	13
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (197)

Alignment image suppressed for unigene with 197 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118427	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	212
5	128955	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	121

Preceding Unigenes (2)

Unigene	Build
SGN-U212655	Lycopersicon Combined #3
SGN-U212656	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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