Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579998 in the current build, Tomato 200607 #2

Unigene SGN-U312630

Unigene Basic Information

Unigene ID:	SGN-U312630
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312630
mRNA sequence:	Length: 1831 bp

>SGN-U312630 Tomato 200607 #1 (83 members)
CTCCTCCTTCTCTAACACCTAAAGACCTAATCTTCTCGACGAAGATTCCTATCTGTTGAAAGATGTTTGGGAGAGCACCGAAGAAGAGTG
ATAACACTAAGTACTATGAGATCTTGGGAGTGCCTAATACTGCTTCACCAGATGATTTGAAGAAAGCTTATCGTAAAGCTGCTATTAAGA
ATCATCCTGATAAGGGTGGTGATCCTGAAAAATTCAAGGAGATTGCCCAAGCCTATGAGGTCTTGAATGACCCTGAGAAACGTGAGATCT
ATGATCAGTATGGTGAAGATGCTCTCAAGGAAGGAATGGGTGGTGGAGGTGGTGGACATGACCCGTTTGACATATTCCAGTCATTCTTTG
GTGGAGGCGGGTTTGGTGGTGGTGGAAGCAGCAGAGGAAGAAGGCAAAGGAGAGGGGAGGATGTTGTCCACCCTCTCAAGGTCTCTTTGG
AGGATCTTTACAATGGAATATCAAAGAAGCTATCACTATCTCGCAATGTGTTGTGCTCAAAGTGCAAGGGGGTAGGGTCTAAATCAGGTG
CTTCATTGAAATGTCCTGGATGTCAAGGGAAAGGAATGAAAGTTTCAATCAGACAACTTGGCCCCATGATCCAGCAGATGCAGCACCCAT
GTAATGAGTGTAGGGGTACTGGTGAGAAAATAAACGATAAAGACAGGTGTCCACAGTGCAAGGGCGAGAAAGTTGTGCAGGAGAAGAAGG
TGTTGGAAGTTGTTGTGGATAAGGGTATGCAAAATGGACAAAAGATAACATTTCCAGGAGAGGCTGATGAGGAGCCTGATACTGTCACTG
GAGACATTGTTTTTATCTTGCAACAGAAGGAACATCCCAAGTTTAAGCGAAAGGGAGATGATCTCTTTGTAGAACACACCTTGACCTTGA
CTGAGGCTCTCTGTGGTTTTCAGTTTGTCTTGACTCACCTAGATAATAGACAGCTGATAATCAAGTCCCAACCTGGAGAAGTTGTCAAGC
CTGATCAATTTAAGGCCATAAATGATGAAGGCATGCCAATGTACCAAAGGCCATTCATGAAAGGTAAACTGTACATTCACTTCACCGTGG
ACTTCCCCAACACATTAACCCCAGAGTTGTGCAAGAATCTTGAAGCAGTGCTGCCAGCAAGGCCTAAAACACAAGCGTCCGATATGGAAT
TGGACGAGTGCGAGGAAACCACCTTGCATGACGTGAACATTGATGAGGAGATGCGTAGGAAGCAGCAGCAACAGGCCCAAGAGGCATATG
ACGAAGATGACGACGATATGCATGGTGGTGCACAGAGAGTGCAATGTGCACAACAGTAATTTGATACTCTCTTTTTCGGTAGATAGCAGT
ACTTAATTTCGTCAAGTATATCAATCTCCCTGTTCTTGGGTTTGATAATAGGGCTGATATAAGAATTGACAGTCAGGAACAACATTGCTC
TAGTAGGAGATATAGATTATTACTATTGACTTTGAAATTTTATTTATGCATAAAACTGTGAGCAAAATTTTGTGACCTGGGATTATTAGA
TGTTGTGTTATTGTATCTGTCTTCAGGAGCCCCAAATTACCTATCGAGGAACCGAGGCTTGCGGTAGTAATACAAGAAAAATCTACTCTC
TACTATATATATGGTTGCAGGGGCATAGCTAGACCACCTATGGTGGCCAATTAGACACCATTCGTTAAAAAATTTCGATATATATGTGAA
TATTTGATCCTTTAGTGTAATGTCAATAGTGTCCATTTGAATGAATGAATTTCAGATCGAACTTCAAATATCAAAATTCATGTTTCTCAA
AAAAAAAAAAAAAAAAACTCGAGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	11
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (83)

Alignment image suppressed for unigene with 83 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	118427	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	212
5	128955	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	121

Preceding Unigenes (1)

Unigene	Build
SGN-U212654	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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