Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578975 and SGN-U579862 in the current build, Tomato 200607 #2

Unigene SGN-U312661

Unigene Basic Information

Unigene ID:	SGN-U312661
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312661
mRNA sequence:	Length: 1266 bp

>SGN-U312661 Tomato 200607 #1 (227 members)
TCCATTTCCATCACATCCAATTCGCCGATCGAGTTTCCATAACCCTAATCTAGCTCCACCATGGCCACCGCCGCAGCTACATCCTCGTTC
ATCGGAACACGGCTACCGGAAATCCACTCCGGCTCCGGTAGAGTCCAAGCCCGATTCGGATTCGGACAGAAAAAAGCCGCACCGAAAAAG
GCTGCGAAGAAGCAAATTCCGGACAGACCGTTGTGGTATCCAGGAGCTAAGGCACCGGAGTATCTAGACGGAAGCCTTGTAGGTGACTAC
GGATTCGATCCGTTCGGTTTGGGGAAACCGGCGGAGTATTTGCAATTTGATTTGGATTCGCTGGACCAGAATTTGGCGAAGAATTTGGCT
GGTGACATTATTGGAACGAGAACTGAAGTTGCTGATGTGAAATCAACTCCGTTTCAGCCTTACAGTGAGGTTTTTGGACTACAGAGGTTC
AGAGAATGTGAATTGATCCATGGAAGATGGGCTATGTTGGCTACTCTTGGTGCACTCACTGTTGAGTGGCTCACTGGTATTACATGGCAA
GATGCCGGAAAGGTTGAGTTGGTTGAGGGATCATCCTACTTAGGGCAACCACTCCCATTCTCCATTACAACATTGATCTGGATTGAGGTT
CTTGTCATTGGATACATCGAATTTCAAAGGAACGCCGAGCTTGACCCAGAAAAAAGGCTTTACCCAGGTGGATCATTCTTCGATCCATTG
GGCCTTGCTGCTGACCCGGAGAAAAAAGCCACCCTTCAACTCGCTGAGATCAAGCATGCTCGGCTCGCCATGGTTGCGTTCTTGGGCTTT
GCTGTCCAAGCTGCTGCTACTGGAAAAGGCCCACTTAACAACTGGGCTACCCACTTGAGTGACCCGCTTCACACTACCATTTTCGACACC
TTCGGATTCTTCTCTTAATTAAGCAACATGCATGAGGATGGTTTTTACGTATATTATATTAAATCTTCATCTTGTAAAAAAATGTAACAT
TAATTTGACACTTCAAGGAGAAGCCTATATCAGACTTGTCGTTTTATTTTATCATTCAATATCTTTAAAAAAAAAAAAAAAAATTTTGCA
TTATTGATATTGAAGATGCACATTTGGAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATTGGGGGGGGGGGGGGGGGCCCCCTTTCCCCCTTTGGGGGGGGAAAATAAATTTTGGGGGGGGGTTTTTA
AAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	58
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	14
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLER	leaf 4 weeks	5127	10
Solanum lycopersicum	cLES	leaf 4 weeks	5243	9
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	37
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	10
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	25
Solanum lycopersicum	cTSB	seed	1880	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (227)

Alignment image suppressed for unigene with 227 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (5)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	129425	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U213039	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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