Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U583189, SGN-U583190, and SGN-U596333 in the current build, Tomato 200607 #2

Unigene SGN-U312666

Unigene Basic Information

Unigene ID:	SGN-U312666
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312666
mRNA sequence:	Length: 2333 bp

>SGN-U312666 Tomato 200607 #1 (102 members)
AGACATTCCAAAGAGTTATTGAGAATGCTAATGTTATCATGGCTACATATGAGGATCCCCTTCTTGGTGATGTCCAGGTTTATCCTGAGA
AAGGTACCGTTGCTTTCTCAGCTGGGTTGCATGGGTGGGCTTTCACTCTCACCAATTTTGCCAAGATGTATGCTTCCAAATTTGGTGTTG
ATGAGTCTAAGATGATGGAGAGGCTGTGGGGTGAGAACTTTTTTGACCCTGCCACCAAAAAGTGGACCACAAAAAACACCGGGACAGCTT
CGTGCAAGCGTGGGTTTGTTCAATTCTGCTATGAGCCAATTAAGCAGATTATCAACACTTGCATGAACGATCAGAAAGATAAGCTCTGGC
CTATGTTGCAGAAGCTTGGTGTAACCATGAAATCTGATGAAAAAGATTTGATGGGCAAGGCACTGATGAAGCGTGTGATGCAGACCTGGC
TTCCCGCAAGTACTGCTCTTCTTGAAATGATGATATATCATCTCCCATCACCGTCCACAGCTCAAAAATACCGTGTGGAGAACTTGTATG
AGGGACCCCTTGATGATGCTTATGCTAATGCTATCAGGAACTGTGACCCAGAAGGGCCGCTTATGCTTTATGTATCAAAGATGATTCCAG
CATCTGACAAGGGTAGATTCTTTGCTTTTGGTCGTGTATTTGCTGGGAAGGTTTCTACTGGTATGAAGGTTAGAATCATGGGTCCTAACT
ATGTTCCTGGTGAAAAGAAGGATTTATATGTCAAGAATATCCAGCGAACTGTTATTTGGATGGGTAAGAGGCAAGAAACTGTTGAGGATG
TTCCCTGTGGTAACACTGTTGCCATGGTTGGTTTGGATCAGTTTATTACCAAGAATGCAACATTGACCAATGAAAAGGAAGTCGATGCTC
ACCCTATCAGAGCAATGAAGTTTTCTGTCTCACCAGTTGTGCGTGTAGCTGTTCAGTGCAAGGTCGCATCTGACCTTCCCAAGCTTGTTG
AAGGGTTGAAACGTCTGGCTAAGTCTGATCCTATGGTTGTTTGTTCTATTGAAGAGTCTGGAGAGCATATTATTGCTGGTGCTGGAGAAC
TCCACCTTGAGATCTGTCTGAAGGATTTGCAGGATGACTTTATGGGCGGTGCTGAAATTATAAAATCTGATCCCGTTGTGTCCTTCCGTG
AGACGGTCCTCGAGAAGTCTACTCGAACTGTGATGAGCAAGTCCCCTAACAAGCATAACCGTTTGTACATGGAGGCTAGACCAATGGAGG
AAGGGCTTGCTGAGGCTATTGACGAGGGACGCATTGGCCCTAGGGATGACCCTAAGGTTCGTTCCAAGATCTTGGCTGAGGAGTTTGGCT
GGGACAAAGATCTTGCAAAGAAGATTTGGTGCTTTGGTCCTGAGACAACTGGTCCCAACATGGTGGTGGATATGTGTAAGGGAGTTCAGT
ACCTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCTTCGAAGGAAGGTGCATTGGCTGAAGAGAACATGAGAGGTATTT
GCTTTGAAGTCTGTGATGTTGTTCTTCATTCTGATGCTATTCACAGGGGTGGTGGCCAAGTTATTCCCACTGCTAGGAGGGTTATCTATG
CTTCTCAGCTTACTGCTAAACCCCGCCTGTTGGAGCCCGTTTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCCCTTGGTGGTATCTATA
GTGTTCTGAATCAGAAGCGTGGACACGTGTTTGAGGAGATGCAGAGGCCAGGAACTCCTCTTTACAACATCAAGGCTTACCTTCCTGTTG
TTGAGTCTTTTGGATTTTCAGGTACCTTGAGAGCTGCTACTTCAGGTCAAGCCTTCCCACAGTGTGTGTTTGATCATTGGGAAATGATGT
CCTCTGACCCATTGGAAGCTGGCTCACAAGCTCATCAACTCGTCCTTGATATCCGCAAGAGGAAGGGTTTGAAGGATCAGATGACCCCTC
TATCCGAGTTTGAGGACAAGCTGTAAGCTTGTGGAAGTTTCAACTTGGCAGAGGTTTTTGATGGACACTTTTGCTTAATTGGATCTGCAG
AAGTTTTGTTTTACATTTATATGTGTTTTAGCAGTTAGTTTTACCATTTTCATGTAGGAGTTTGAACCGTAAGTGAGCTATTTTGTTACT
TTCTTTTATGTCATTTACAGAGACAAAAATCTTGCCCTTTGTGTTTTCTTAAATAAAAATCTTAACTATTCCTCGCTTTTGTCCTTTCCG
GGAACCCCCCCAAATGTTTTCAAACTTTTCACGTGTATTCAAGTGTGTTGATGTTACATCGTCTGTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
elf2	elongation factor 2	elongation factor 2

Genomic locations (0)

None

Library representation (26)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	15
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	20
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	6
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (102)

Alignment image suppressed for unigene with 102 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118816	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129589	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U213093	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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