Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U583189, SGN-U583190, and SGN-U596336 in the current build, Tomato 200607 #2

Unigene SGN-U312667

Unigene Basic Information

Unigene ID:	SGN-U312667
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312667
mRNA sequence:	Length: 2981 bp

>SGN-U312667 Tomato 200607 #1 (62 members)
GCGGCCAAATCGGCCGAATTAGTGTTGGTCTGAGAAGACCTCGCCGCCTCCTTCTCTCTGCACTGAACAAGACGAATTTGTAGTTACATT
GACAGCCATTCAAGATGGTGAAGTTCACAGCTGAAGAGCTTAGAAGGATTATGGACTTCAAGCATAACATTCGTAATATGTCTGTTATTG
CTCATGTGGACCATGGAAAATCTACCCTTACTGATTCTCTGGTGGCGGCTGCTGGTATCATTGCTCAGGAAGTTGCAGGTGATGTCAGAA
TGACAGATACACGTGCAGATGAGGCTGAGCGTGGTATCACCATCAAGTCCACTGGTATTTCACTTTACTACGAGATGACTGATGACTCCT
TGAGGAACTTCAAGGGAGAGAGAAATGGGAACGAGTACCTCATCAACCTCATCGATTCACCTGGGCACGTTGACTTCTCATCTGAAGTGA
CTGCTGCTCTTCGTATTACTGATGGTGCACTTGTGGTGGTTGATTGTGTGGAAGGTGTCTGTGTCCAGACAGAGACTGTGCTCCGTCAGG
CCCTTGGTGAAAGGATTCGTCCTGTCTTGACAGTTAACAAGATGGACAGGTGTTTCCTCGAGCTTCAGGTTGATGGAGAGGAGGCCTATC
AGACATTCCAAAGAGTTATTGAGAATGCTAATGTTATCATGGCTACATATGAGGATCCCCTTCTTGGTGATGTCCAGGTTTATCCTGAGA
AAGGTACCGTTGCTTTCTCAGCTGGGTTGCATGGGTGGGCTTTCACTCTCACCAATTTTGCCAAGATGTATGCTTCCAAATTTGGTGTTG
ATGAGTCTAAGATGATGGAGAGGCTGTGGGGTGAGAACTTTTTTGACCCTGCCACCAAAAAGTGGACCACCAAAAACACTGGTTCAGCTT
CGTGCAAGCGTGGGTTTGTTCAATTCTGCTATGAGCCAATCAAGCAGATTATCAACACTTGCATGAATGATCAGAAAGATAAGCTCTGGC
CTATGTTGCAGAAGCTTGGTGTAACCATGAAATCTGATGAAAAAGATTTGATGGGCAAGGCACTGATGAAGCGTGTGATGCAGACCTGGC
TTCCCGCAAGTACTGCTCTTCTTGAAATGATGATATATCATCTCCCATCACCGTCCACAGCTCAAAAATACCGTGTGGAGAACTTGTATG
AGGGACCCCTTGATGATGCTTATGCTAATGCTATCAGGAACTGTGACCCAGAAGGGCCGCTTATGCTTTATGTATCAAAGATGATTCCAG
CATCTGACAAGGGTAGATTCTTTGCTTTTGGTCGTGTATTTGCTGGGAAGGTTTCTACTGGTATGAAGGTTAGAATCATGGGTCCTAACT
ATGTTCCTGGTGAAAAGAAGGATTTATATGTCAAGAATATCCAGCGAACTGTTATTTGGATGGGTAAGAGGCAAGAAACTGTTGAGGATG
TTCCCGATGGTAACACTGTTGCCATGGTTGGTTTGGATCAGTTTATTACCAAGAATGCAACATTGACCAATGAAAAGGAAGTCGATGCTC
ACCCTATCAGAGCAATGAAGTTTTCTGTCTCACCAGTTGTGCGTGTAGCTGTTCAGTGCAAGGTCGCATCTGACCTTCCCAAGCTTGTTG
AAGGGTTGAAACGTCTGGCTAAGTCTGATCCTATGGTTGTTTGTTCTATTGAAGAGTCTGGAGAGCATATTATTGCTGGTGCTGGAGAAC
TCCACCTTGAGATCTGTCTGAAGGATTTGCAGGATGACTTTATGGGCGGTGCTGAAATTATAAAATCTGATCCCGTTGGGTCCTTCCGTG
AGACGGTCCTCGAGAAGTCTACTCGAACTGTGATGAGCAAGTCCCCTAACAAGCATAACCGTTTGTACATGGAGGCTAGACCAATGGAGG
AAGGGCTTGCTGAGGCTATTGACGAGGGACGCATTGGCCCTAGGGATGACCCTAAGGTTCGTTCCAAGATCTTGGCTGAGGAGTTTGGCT
GGGACAAAGATCTTGCAAAGAAGATTTGGTGCTTTGGTCCTGAGACAACTGGTCCCAACATGGTGGTGGATATGTGTAAGGGAGTTCAGT
ACCTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCTTCGAAGGAAGGTGCATTGGCTGAAGAGAACATGAGAGGTATTT
GCTTTGAAGTCTGTGATGTTGTTCTTCATTCTGATGCTATTCACAGGGGTGGTGGCCAAGTTATTCCCACTGCTAGGAGGGTTATCTATG
CTTCTCAGCTTACTGCTAAACCCCGCCTGTTGGAGCCCGTTTACCTTGTGGAAATTCAGGCTCCGGAGCAAGCCCTTGGTGGTATCTATA
GTGTTCTGAATCAGAAGCGTGGACACGTGTTTGAGGAGATGCAGAGGCCAGGAACTCCTCTTTACAACATCAAGGCTTACCTTCCTGTTG
TTGAGTCTTTTGGATTTTCAGGTACCTTGAGAGCTGCTACTTCAGGTCAAGCCTTCCCACAGTGTGTGTTTGATCATTGGGAAATGATGT
CCTCTGACCCATTGGAAGCTGGCTCACAAGCTCATCAACTCGTCCTTGATATCCGCAAGAGGAAGGGTTTGAAGGATCAGATGACCCCTC
TATCCGAGTTTGAGGACAAGCTGTAAGGCATATGTTTGAGATGGCAGCAGATGATATTTAACCTGCTCAATTGATTCCGCGAAAGTTTTG
TTTTGCATTTATCATCTATCTGTTTGGATAATTACTTTGATCATCTTGTGTTGATTAGGATACTAGCTCGTAAGTTTGTTGTTGCAGAAT
TTATTACCTCTATCTTTTCTATGGACAAAACTATTTCTGTCGTATTTTATTTGAAGAAGCCTTTTACTTCAAAAAAAAAAAAAATAATTT
TGCTGTGTTAGTTTCTAAACAAAGTGCAATTTCAAATATAATTAAATAATTTCTCTGTTGAATTAGATTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
elf2	elongation factor 2	elongation factor 2

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (62)

Alignment image suppressed for unigene with 62 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P115494 (855 Aa)

MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDSLRNFK
GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQR
VIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSASCKRG
FVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASTALLEMMIYHLPSPSTAQKYRVENLYEGPLD
DAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGMKVRIMGPNYVPGEKKDLYVKNIQRTVIWMGKRQETVEDVPDGN
TVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEI
CLKDLQDDFMGGAEIIKSDPVGSFRETVLEKSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDEGRIGPRDDPKVRSKILAEEFGWDKDL
AKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLT
AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWEMMSSDPL
EAGSQAHQLVLDIRKRKGLKDQMTPLSEFEXQAVRHMFEMAADDI

SignalP predicts non-secretion with a score of 0.035

IPR004161 Elongation factor Tu, domain 2
IPR001093 IMP dehydrogenase/GMP reductase
IPR005517 Elongation factor G, domain IV
IPR000795 Protein synthesis factor, GTP-binding
IPR000640 Elongation factor G, C-terminal

Prediction based on longest six frame method

>SGN-P241845 (847 Aa)

QPFKMVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDSL
RNFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ
TFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSAS
CKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASTALLEMMIYHLPSPSTAQKYRVENLYE
GPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGMKVRIMGPNYVPGEKKDLYVKNIQRTVIWMGKRQETVEDV
PDGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGEL
HLEICLKDLQDDFMGGAEIIKSDPVGSFRETVLEKSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDEGRIGPRDDPKVRSKILAEEFGW
DKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYA
SQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWEMMS
SDPLEAGSQAHQLVLDIRKRKGLKDQMTPLSEFEDKL

SignalP predicts non-secretion with a score of 0.072

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118816	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129589	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	18

Preceding Unigenes (2)

Unigene	Build
SGN-U213093	Lycopersicon Combined #3
SGN-U213094	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer