Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577458, SGN-U578484, and SGN-U591872 in the current build, Tomato 200607 #2

Unigene SGN-U312689

Unigene Basic Information

Unigene ID:	SGN-U312689
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312689
mRNA sequence:	Length: 1444 bp

>SGN-U312689 Tomato 200607 #1 (182 members)
TTGAAATGTAAGGTTCTTGGCTTCTTAGCCATATGATATTAAGGCAAAAGTAAGATACAACATTGAATCTCCAACGTACAAACCTCATCT
ACAATGGATTGAAGCTCTCATTTGCTTAGCCATCACTTTCAACATTGTCTATTGGATTGGTTATATGTAAGAGTTCAAAAGCAGCAATAA
TCAAGAACACATCACTAGCTATACTATTACTAGTTAGTAACAAAGTAGTATAAAGGGCAAGCAAAAGCTAAAGGAAGCTCATTGAGAAAT
GTCAACTGCTTCCATTAACAATTGCCTTACTCTCTCCCCTGCTCAAGCTTCCCTTAAGAAACCTACTCGTCCCGTTGCCTTCGCAAGGCT
TGGCAACTCTTCTTCTTCTTCTTCTATTCCAAGTCTCATCAGAAACGAGCCCGTCTTTGCTGCCCCTACTCCCATCATCAACCCCATTGT
GAGAGAAGAAATGGCAAAAGAATCCTACGATCAAGCCATTGCTGCACTCGAGAAACTCCTCAGCGAGAAAGCAGAACTTGGACCAGTTGC
TGCAGCAAGAGTTGACCAGATCACTGCTGAATTGAAATCAGCAGACGGCGGCAAGGCATTCGACCCTGTTGAGCACATGAAAGCTGGCTT
TATTCATTTCAAGACTGAGAAATATGACACAAACCCAGCCTTATATGGTGAGCTAGCAAAGGGCCAGAGCCCTAAGTTCATGGTTTTCGC
GTGCTCTGACTCACGAGTCTGCCCATCCCATGTCCTCAACTTCCAACCTGGTGAGGCATTCATGGTTCGTAACATCGCCAACATGGTCCC
TGCTTATGACAAGGTCAGGTACTCTGGAGTAGGAGCAGCCATTGAATACGCCGTTCTTCATCTTAAGGTGGAGAACATCGTTGTCATTGG
CCACAGTGCTTGTGGAGGTATCAAAGGTCTCATGTCACTACCTGAAGATGGTAGTGAATCAACTGCCTTTATTGAGGATTGGGTAAAAAT
TTGTTTACCTGCCAAGGCAAAGGTTCTGGCCGATCACGGAGGGAAAGAATTTGCACATCAATGCACAGCTTGTGAGAAGGAAGCTGTGAA
CGTTTCACTTGGAAATCTGCTTACGTATCCATTCGTGAGAGAAGGATTGGTGAAGAAAACATTGGCATTGAAGGGAGGTTACTATGATTT
CGTGAAGGGTGGATTTGAGCTGTGGGGACTTGAGTTCGGTCTTTCTCCTCCTCTTTCCGTATGAACTTAATTCAATTACCATTTGGCCCT
CACAATTTCCTTCCTTTTTTTTTTTTTCGCCTGACAGTACTTTTGCTTCGCAAAATCAACTGTGTGTATGTTGTTTGTATGTATTATGTA
TGTATGAATCAAATATGGAAGAGCACTCGTTGTTATATTTCTGAAATAAATAAAATGGAGACTACTTTTTGTATAAAAAAAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ca2	chloroplast carbonic anhydrase	chloroplast carbonic anhydrase

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	15
Solanum lycopersicum	LA	Leaf Mature leaves	6589	34
Solanum lycopersicum	LB	Leaf Mature leaves	3316	5
Solanum lycopersicum	LC	Leaf Mature leaves	5712	15
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLER	leaf 4 weeks	5127	22
Solanum lycopersicum	cLES	leaf 4 weeks	5243	10
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	33
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	9

mRNA member sequences (182)

Alignment image suppressed for unigene with 182 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 5 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101889	Carbonic anhydrase prokaryotic and plant - Molecular Function: carbonate dehydratase activity (GO:0004089) - Molecular Function: zinc ion binding (GO:0008270) - Biological Process: carbon utilization (GO:0015976)	30
2	118785	Carbonic anhydrase prokaryotic and plant - Molecular Function: carbonate dehydratase activity (GO:0004089) - Molecular Function: zinc ion binding (GO:0008270) - Biological Process: carbon utilization (GO:0015976)	30
5	129258	Carbonic anhydrase prokaryotic and plant - Molecular Function: carbonate dehydratase activity (GO:0004089) - Molecular Function: zinc ion binding (GO:0008270) - Biological Process: carbon utilization (GO:0015976)	28

Preceding Unigenes (1)

Unigene	Build
SGN-U213080	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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