Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577409 in the current build, Tomato 200607 #2

Unigene SGN-U312761

Unigene Basic Information

Unigene ID:	SGN-U312761
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312761
mRNA sequence:	Length: 811 bp

>SGN-U312761 Tomato 200607 #1 (71 members)
TCATAATTCCAAAATCCAAACAGAGCTGAAGAGATTTTCAAAAAAAACTAAATTGTGTGAAATTCTAGAATCATCTTCTCTGTGATTAGT
AGAAGAAGAAAAATGGCGGATCAGCTGACGGATGACCAGATCTCTGAGTTCAAAGAGGCTTTCAGTTTGTTCGACAAGGACGGAGATGGT
TGCATCACGACTAAGGAGCTTGGGACTGTGATGAGGTCGTTGGGACAGAACCCTACTGAAGCTGAGCTCCAGGACATGATAAACGAGGTG
GATGCAGATGGTAATGGAACCATCGACTTCCCAGAGTTTCTAAACCTTATGGCCAGGAAGATGAAGGATACTGACTCTGAGGAGGAGTTG
AAAGAGGCATTCAGAGTTTTCGACAAGGATCAAAATGGCTTCATCTCCGCTGCTGAGCTTCGTCATGTGATGACTAACCTTGGAGAGAAG
CTTACTGATGAAGAAGTCGATGAGATGATTAGGGAAGCTGATGTTGATGGTGATGGACAAATCAACTATGAGGAGTTTGTTAAGGTCATG
ATGGCCAAGTAATTCCATTATCCTCTTGTTACATTTGAAGTTTAGACTTGTCAAAAATGTGAAAAAATCCAAAAATAATTCATTGGGTAG
GCTCTTGTCTAGTATAATGTTAGTCTTACCATCTCGATGTATTGAACCTTCATTGAATGTAATGTTTTATTGTATGAAAAAAAAAAAAAT
CTACTTATTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCCAAAGGGCCCCCTTTGAATTTTTTTGGGGGCCCCCAA
A

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
calm2	calmodulin TOMCALM2LE

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	9
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	9
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128952	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	130

Preceding Unigenes (2)

Unigene	Build
SGN-U212853	Lycopersicon Combined #3
SGN-U212854	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer