Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578628 in the current build, Tomato 200607 #2

Unigene SGN-U312804

Unigene Basic Information

Unigene ID:	SGN-U312804
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312804
mRNA sequence:	Length: 1647 bp

>SGN-U312804 Tomato 200607 #1 (58 members)
GGGCGATTGGCGGCCAATCGGCCGAATTGGGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGAT
CATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTAC
TCATTCCCCACACAATGTTTATCCAAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGA
GAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTG
AAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTT
GTCAATGACAGTGGCGGTGTCAAGAACGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTG
GATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATT
GACATTGTTATTGAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACT
GCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGCAAT
GCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGAATTGTGAAGGGTACAATGACAACAACTCAC
TCTTACACCGGAGATCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGT
ACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTC
TCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCA
CTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTG
ACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGCCAAAGAGTTGTGGACTTGGCTCAT
CTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAA
TGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGG
AAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAAAACT
CAATTCTGTAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	9
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	12
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (58)

Alignment image suppressed for unigene with 58 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101545	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	78
2	118512	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	71
5	129168	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	34

Preceding Unigenes (2)

Unigene	Build
SGN-U213320	Lycopersicon Combined #3
SGN-U220594	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer