Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U575297 in the current build, Tomato 200607 #2

Unigene SGN-U312832

Unigene Basic Information

Unigene ID:	SGN-U312832
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312832
mRNA sequence:	Length: 1849 bp

>SGN-U312832 Tomato 200607 #1 (141 members)
TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTGCAGTTTGTGGTGTTTTTGCTGAGGAGAACG
AATATGTGTTGACTTTGGACCATTCTAACCTCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTGGTGTG
GACACTGTAAGAGTCTTGCTCCTGAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATGACCCTCCAATTGTTCTAGCTAAGTATGATG
CAAATGATGAAGCCAATAGAGAACTTTCAAAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAG
TTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAGTGGGTCCTGCATCTGCTGAAATCAAGTCGA
AGGAAGATGCCACAAACCTTATTGATGAGAAAAGTATCTTTGTTGTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATT
TAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAACACCTCCCTCGGGGTGGACCAGTCAACAAGC
CCACTCTTCGTCTTCTAAAGCCATTTGATGAACTCTTTGTTGATTTTGAGGACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAAT
CTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACAAGTTCTTCGAAGGCACCAACGCCAAGGCAT
TGCTATTTGTGAACTTTAGCTCTGAATTTGATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCT
TTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACG
CTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGAAGGAAAACTGAAGCCAC
ATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGG
GAAAAAATGTGCTGTTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTG
AAAGCGATCCTGATGTTCTCATTGCAAAACTGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTA
TGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTG
GCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAGGACTCTAGGAACATTGTGTACTGGTGGATTCA
AGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGC
TTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTT
CTCCAACTTTATAGTAAAAAAAAAAAAAAAAATCTTCTTTGTCCCAGAATGCTACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAAT
GATACACAATAATTAAAGAAGTTCAAAAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	16
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	23
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	15
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	14
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	14
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (141)

Alignment image suppressed for unigene with 141 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129257	Thioredoxin fold Endoplasmic reticulum targeting sequence Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	28

Preceding Unigenes (2)

Unigene	Build
SGN-U212983	Lycopersicon Combined #3
SGN-U212985	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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