Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583216 in the current build, Tomato 200607 #2

Unigene SGN-U312861

Unigene Basic Information

Unigene ID:	SGN-U312861
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312861
mRNA sequence:	Length: 1269 bp

>SGN-U312861 Tomato 200607 #1 (149 members)
GAAATTGAGTGAAACAAAAAGTATAGTAGAAGAATATAGAGTTAGTTTTACTAATAAATACACAAAGGTTAAGTGGAAAGTAGAAAAGAT
TCCCTAAAACACTCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAA
AAAAAATTCTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCA
GAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTA
CGCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCAC
TTGCAACGGAGATAATCAAGTTACTCGTGTGGATCTTGGGAACTCAAAGTTATCTGGTCATTTGGTACCTGAGCTCGGAAAGCTTGAACA
TCTACAGTATCTGGAGCTTTACAAAAATAATATTCAGGGAACCATCCCTAAGGAGCTCGGTAACTTGAAGAGCCTTATTAGTCTGGATCT
GTACAACAACAATATTTCGGGGACAATTCCTACTTCACTTGGAAACCTGAAAAACCTTGTTTTCTTGCGTCTAAATGATAACAAGCTAAC
AGGACCAATCCCAAGAGAACTTACTAGCATTTCTAGCCTGAAAGTTGTGGATGTCTCGAATAATGATTTGTGTGGAACAATTCCTACTTC
TGGTCCATTTGAGCATATTCCTCTAAACAATTTCGAGCACAATCCTCGACTTGAAGGTCCGGAGTTGTTGGGACTCGCTACCTACGACAC
CAACTGCTCTTAGAAGCTTGATGAATAGCTTCAGAAGAAGCGCCACTTTAGTGGACGTTTAACAAATTCCCCTGAACCTTGTTTATTGGT
GTACTTACAGTGTGTCCAAAGTTGTAACTCTAAGCAAAAATATGGTGTATGTAGGTTATTACTGAGTTAAGGTATGTGTGTAAAACAATC
TCTATACTGCTACCAACTGTTGATGTATTTCATATTTTAATGTCTAGTGAAATGGTTCAGTGGGATTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTGGGGGGGGGGGGGGGGGACAAATTTCCCCCATAAAGGGAAA
AAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	8
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	12
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	6
Solanum lycopersicum	cTSD	seed	1504	13
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (149)

Alignment image suppressed for unigene with 149 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (9)

Annotations (manual: 2 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128926	Leucine-rich repeat	647

Preceding Unigenes (1)

Unigene	Build
SGN-U213193	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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