Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578741 in the current build, Tomato 200607 #2

Unigene SGN-U312881

Unigene Basic Information

Unigene ID:	SGN-U312881
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312881
mRNA sequence:	Length: 2794 bp

>SGN-U312881 Tomato 200607 #1 (132 members)
ATCGGCCGAATTGGCTCATTTCGCAGTTGTTTACAGTTTTCCTAAACGGAACTCTACCATCTCTTTTTTCCGGTTACCGTTTAGGTTTCC
GACCAATTTTCTTCTTCTCCGGTGAACTATTCCGGTTAAAAGTTGTATGGTGGGGTGTTTGTTTGAATCTTAGGTTTGTGTTTCTGTTGG
TTTTGAGTTTTAATTCTTTGTTTTGATTTAGAAAATTTTGCTTCTTCTGAAGTCGTTGTGGGGATATTCGGGTCGTGTAAGAGTGTGTTA
GAAGGTGATTATCTTTTGATTAAGTTCTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCTCTGGCCTCGGCGGGTTCTAAAGCCCCCAG
CTATTACAACATTGGTCAACAAATCATTTCTGTATAATTAGTTTTACACATTCTTTGATTCTTTTTTTTTTGTGAAGATTTTACGAGATG
CCTGCTTTAGGTTGTTGTGTAGAATCTGCTGTTTCCCCTCCTCTTGGCTATTCCTTCCTTTCCACGCCGGAGATTTTTTCCTCCGGCGTA
CCTCCGTCGACAAACGCTGTCCCTCTTACCACCCATTGGTCACCGGAGCTGTCATCTGATCTGTATCGTATTGATGGTTGGGGTGCTCCG
TATTTCACCGTTAATTCTTCCGGTGATATATCTGTCAGGCCCCATGGTACAGATACCCTTCCTCACCAAGAAATTGATCTCCTGAAGGTC
GTGAAAAAGGCTTCCGACCCGATTAATTCTGGTGGGCTCGGGTTACAGCTTCCACTCGTTGTTCGGTTTCCTGATGTTTTGAAGAACCGA
TTGGAGTCTCTTCAATCGGCTTTTGATTATGCTGTTCAATCTGAAGGATATGAGGCTCATTACCAAGGTGTTTATCCTGTAAAATGCAAT
CAGGACAGGTTCGTTGTTGAAGATATTGTCAAATTCGGGACGGGTTTCCGGTTTGGTCTTGAAGCTGGGTCAAAACCTGAGCTCCTCCTG
GCCATGAGCTCTCTATGCAAGGGCAGCTCGGAGGGTCTTCTTGTATGCAACGGATTCAAGGATGCAGAATACATTTCACTTGCTTTGGTT
GCAAGAAAGCTCCAATTGAACACGGTGATTGTGCTCGAACAAGAGGAGGAGCTTGATTTGGTGATTGACATCAGCCGTAAAATGGCGGTC
CAGCCTGTAATTGGGCTCCGGGCTAAGCTTAGGACCAAACATTCCGGTCATTTTGGATCCACTTCTGGAGAGAAAGGCAAGTTTGGGCTT
ACAACAACTCAGATCCTTCGTGTGGTGAGGAAACTGAAAGAATCCGGAATGTTAGATTGTCTTCAGCTGCTGCATTTCCACATTGGATCT
CAGATCCCTTCAACGGAGTTGCTTGCTGATGGTGTTGGTGAGGCTGCTCAGGTTTATTCTGAGTTAGTCCGCCTTGGTGCTGGCATGAAA
TTCATTGATATTGGTGGTGGGCTTGGAATTGATTATGATGGTACCAAATCTTCCGATTCTGATGTTTCCGTCGGATATGGCCTTCAGGAT
TACGCCTCTACAGTGGTTCAAGCTGTCCGGTTTGTTTGTGACCGGAAGAACGTGAAGCATCCGGTGATCTGTAGCGAAAGTGGCAGAGCA
ATTGTATCTCATCACTCTGTTCTGATATTTGAAGCTGTGTCTTCAACTACCACGCGTTCTCAAGAGCTGTCCTCTATGAGTCTCCACTCC
TTCGTGGAGAAACTCAATGATGACGCTCGTGGCGATTACCGGAATCTATCTGCTGCTGCTATTCGCGGAGAGTACGATACCTGTATGCTT
TATGCCGATCAGTTGAAACAGAGGTGTGTGGATCAGTTCAAAGATGGTAATCTGGACATTGAACAGCTTGCTGCCGTAGATGCCGTCTGT
GACTTTGTGTCAAAAGCTATTGGTGCTTCTGACCCTGTTCGCACCTATCATGTGAATCTGTCCGTTTTCACTTCAATTCCTGATTTCTGG
GCAATCGACCAACTATTCCCGATTGTTCCCATCCACAAGCTAGACGAACATCCTTCAGCTCGGGGAATTCTATCCGACTTGACATGTGAC
AGTGATGGAAAGATCGATAAATTCATCGGAGGCGAGTCAAGCTTGGCTCTCCATGAATTGGGAAGTGGAAACAGCGCACCTTATTATCTG
GGAATGTTTTTAGGCGGGGCATATGAGGAAGCCCTCGGCGGACTCCATAACCTATTTGGCGGACCAAGCGTCCTGCGTGTGTCACAGAGC
GACAGCCCTCACAGCTTCGCTGTAACCTATGCAGTCCCTGGGCCTTCCTGTGCTGACGTCCTCCGAGCAATGCAACACGAGCCTGAACTC
ATGTTCGAGACCCTCAAGCACCGTGCAGAGGAATTCGTGCACAAGGAAGAAGAAGTAGAAGTCTCATTGGCCAATAGCCTAAATCAGTCG
TTCCACAACATGCCATATCTTGCACCACATTCATCCTGCTGTTTTTCTGGGTATTACTATTGCAATGATGAGAATATTGTTGGTGTTGGC
GCAGAATGTGCAATAGGGGAGGAAGAGTTTTGGCCATACTGCGTTGCTTGAAGACTTTTTGTCTTTTCAGTTTGTTGTTTTAGTAATAAA
GTTTGTCGGATGGTATGTTAAATTAATGTAAATTTTTGGTGTAATTTACTAGTTGTGGAGAAAGTTATGGTTCAATCTTTGTGTAATTTT
CTCCTTATCCTATGTAAACTTTTTCCTTATTAAATGAATTTACCTTAGAAATTAAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAAAG
AAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
adc1	arginine decarboxylase 1	arginine decarboxylase

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	4
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	10
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	35
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	14
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	11
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (132)

Alignment image suppressed for unigene with 132 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101407	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824)	255
2	119696	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13
5	130022	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U213123	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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