Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580244 and SGN-U581432 in the current build, Tomato 200607 #2

Unigene SGN-U312895

Unigene Basic Information

Unigene ID:	SGN-U312895
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312895
mRNA sequence:	Length: 916 bp

>SGN-U312895 Tomato 200607 #1 (52 members)
GGCGATTGGCGGCCAATCGGCCGAATTCCCATGGGGATCCGATGACTCAAAACAAAACAAAAACTCCATTTTTTCTTCATCTTCTTTGTT
TCCCAATCTGCAACTTCTCTTTCCATTTCAAAGTATCTCTCAAAGAAAAGTCAAAGAGAAATGGCGGATCAGCTCACCGAAGATCAGATC
TCTGAGTTCAAGGAAGCTTTCAGTCTTTTTGACAAAGACGGAGATGGTTGTATCACAACTAAGGAACTTGGAACAGTAATGCGGTCATTG
GGGCAGAACCCAACCGAGGCTGAGCTTCAAGACATGATCAATGAAGTTGATGCTGATGGAAATGGGACCATTGATTTCCCAGAGTTCCTT
AACCTGATGGCTCGCAAGATGAAGGACACTGATTCTGAGGAGGAGCTCAAGGAAGCTTTCAGAGTGTTTGACAAGGATCAGAATGGATTC
ATCTCCGCAGCTGAGCTTCGTCATGTGATGACAAACCTAGGCGAAAAGCTTACTGATGAAGAGGTTGATGAGATGATTCGTGAAGCTGAT
GTGGATGGTGATGGGCAGATCAACTACGACGAGTTCGTCAAGGTTATGATGGCCAAGTGAGAACTGATCAATCCAACATAATCTTTAGAA
GTAAAAACACAAAAGAGAAGGAAACAGAGCAGATAAGTTTGTGAGATTTCTATTCCAAATTAGGACACGTTCTTTCTGTTATTACCTTTG
TCTCGATGGTTCTGTAGTTCTGCTCTCCCGTATATCCTGTTTGCCCTGTTCCTTGTCTTCGTAGTTTGGGTTGTTAGCAACTTCTAGTAA
TTTCTCCTGAATTCGGTATTGTGAAACTATGATGTGTCAAACTCTTTTGTTCTGTATTCTATGTGACTAATTTCGTCGACCGAAAAAAAA
AAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	9
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (52)

Alignment image suppressed for unigene with 52 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128952	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	130

Preceding Unigenes (1)

Unigene	Build
SGN-U213182	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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