Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579050 and SGN-U591487 in the current build, Tomato 200607 #2

Unigene SGN-U312949

Unigene Basic Information

Unigene ID:	SGN-U312949
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312949
mRNA sequence:	Length: 2421 bp

>SGN-U312949 Tomato 200607 #1 (111 members)
CTCGTTCCTCTCTTCTATAACAAATTTCTCCAAATCCGTAGATCTTACGATTTCAAAGATGGTGTCGGATGCGGCGAAGAAGAGAGATGC
GCAGAAGAAGGCGGCGGCAGCTGCTAGGAGAGGAGGTAAAGGTGCGGCAGCGCCTAAATCGGCTGCAACCGCGTCTAAATCGGCGGTGGA
AAGTAACGGGGTTGATAATTTGACGAATGGAGTAGGGGATCTACAGATATCTGATCGGACTTGTACGGGTGTTTTGTGTTCACATCCGCT
ATCGAGGGATATTCGGATAGAGTCATTATCAGTCACTTTCCACGGACATGATCTCATCGTTGATTCTGAACTGGAGCTCAACTATGGCAG
ACGTTATGGTTTGTTGGGATTGAATGGCTGCGGGAAGTCTACTCTTCTTACTGCTATAGGGTTGAGGGAACTTCCCATCCCAGACCACAT
GGATATTTTTCATCTTTCTCGGGAGATTGAAGCCTCTGACATGACCTCTCTCGAGGCTGTCATTAATTGTGATGAAGAGAGGTTGCAATT
GGAGAAAGAAGCTGAAGCTTTGGCTGGACAGGACGATGGTGGTGGAGAGCAACTTGAACGGATCTATGAGCGTTTAGAAGCTATGGATGC
TGCCACTGCTGAGAAACGTGCTGCTGAAATCTTGTTTGGGCTTGGATTTGATAAGAAAATGCAAGCAAAGAAAACACGTGATTTTTCCGG
TGGCTGGAGGATGAGGATTGCTCTTGCCCGTGCCCTCTTTATGAATCCAACAATTTTGTTGCTTGATGAGCCAACAAACCATCTTGACCT
AGAGGCCTGTGTGTGGTTAGAAGAATCCTTGAAGAACTTTGAGCGCATTCTGGTTGTCATTTCACACTCACAGGATTTTCTCAATGGTGT
GTGTACCAATATCATCCACATGCAAAACAAGAAGTTAAAACTCTATACAGGTAACTACGACCAATATGTGCAAACCCGTTCAGAGCTGGA
AGAAAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTTCTGCAATGAAGGAATACATTGCTCGCTTTGGGCACGGTTCAGCTAA
ACTAGCCCGTCAAGCACAGAGTAAAGAGAAGACATTGGCTAAGATGGAGCGTGGTGGGCTTACTGAGAAGGTGGGGAGGGACAGTGTCCT
GGTTTTCCGGTTTACTGATGTCGGCAAACTTCCTCCTCCAGTTCTACAGTTTTCAGAAGTTGCTTTTGGCTACACACCTGATAACCTCAT
CTACAAGAACCTTGATTTTGGTGTAGATCTCGACTCCAGGATAGCACTTGTGGGGCCTAATGGAGCTGGAAAGAGCACACTGCTTAAGCT
GATGATAGGGGATTTATTTCCCACTGATGGCATGGTTAAGCGGCATAATCACCTAAAAATTGCGCAGTACCACCAGCACTTGGCTGAGAA
GCTAGACATGGAGGTGTCAGCTCTTTTGTTTATGATGAGAGAGTACCCTGGGAACGAGGAGGAGAAGATGAGGGCAGCAATTGGGAGGTT
TGGACTCACAGGTAAAGCTCAAGTAATGGCAATGAAGAACTTGTCAGATGGTCAACGTAGTCGAGTGATTTTTGCATGGTTGGCTTTTAG
GCAACCCCACATGCTGCTGTTGGATGAGCCAACCAACCATCTTGATATTGAAACCATTGACTCACTTGCAGAGGCCTTGAACGCATGGGA
TGGTGGGATGGTTCTAGTGAGTCACGACTTTAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTATGTGAAAATCAGGCTGTGACACG
ATGGGAGGGTGGCATCATGGATTTCAAGAAACACTTGAAGAAAAGGGCTGGATTGGGTGATTAAAATTAAGATCAATGTGTTCTATATTA
GAAAGTGTGATGGTATCACTATTTCCTCTTGGTGGTTCAGCGCCAAGGCGTAATGGTGAAAAACATCAGCAGGGGCCCCATCACGGTAGC
TGAGGAGAGAAAGTGAAGGCTTCTTGATCACCAGTAAGACCTAAGTAACGTTAGCTAAGACCACGCCTGGTGCTAGAGAGAGTAAGTGAT
CGAACTATGGTCACTGACTGTTTGAACTCTGGCTATTGTTCGGGCTTAGTCCACTATTTTTGTCGTCCATTTTACTCTAATTACATATTA
CCGTAGGTTTTGGAGAACATACATTACAGCTTATTCCTTGTGTCATTTCTATTCTATATCATTGCTATAATGTACTTCGTATTTTTGAAT
TCTGATTATGGATTTTTTAAATATATCAGTTTCTATTTTATCTTCAAAACAAGTAGAATCAGCAGGTTGTTGAGCCATTATCTTGTTCAC
AACACTTGGAACGTTATTATTTTGTAGACTTGAAATTGGAGGTAGATAATATGCTTATATACGAGAATCAATTTAAACCTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	9
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	9
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	11

mRNA member sequences (111)

Alignment image suppressed for unigene with 111 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118764	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	31
5	130183	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U213231	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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