Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578513, SGN-U580606, SGN-U590434, and SGN-U593158 in the current build, Tomato 200607 #2

Unigene SGN-U313020

Unigene Basic Information

Unigene ID:	SGN-U313020
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313020
mRNA sequence:	Length: 1207 bp

>SGN-U313020 Tomato 200607 #1 (115 members)
GCGATTGGCGGCCAATCGGCCGAATTCCCATTGGCGGCCAATCGGCCGAATTGACAGCTCTTCCTTCACATTCTCTTCAGGGTTTCTCTA
GTAGTCTCTCTGAAAAAAAATGGCCGACGTTGAATACAGGTGCTTCGTCGGTGGTCTGGCATGGGCCACCACCGACCAAACACTTTCGGA
AGCTTTTTCTCAGTACGGCGAAGTGGTCGAATCCAAGATCATCAATGACCGGGAAACTGGTAGATCTAGAGGATTTGGATTCGTTACCTT
CAAGGATGAGCAAGCCATGAGGGATGCTATTGAAGGGATGAACGGCCAGGATCTTGATGGTCGCAACATCACCGTGAACGAAGCTCAATC
ACGCGGAGGCGGTGGAGGTGGAGGTGGAAGAGGCGGGGGTGGTTACGGAGGTGGCCGACGTGAAGGCGGTGGCGGAGGCTACGGTGGTGG
CGGCGGCTACGGAGGTGGCCGACGTGAAGGCGGCGGCGGCGGCTACGGTGGAGGCGGCTACGGAGGTGGTCGTCGTGAAGGTGGTTACGG
TGGAGGCGGTGGTGGTTATGGAGGAGGTGACCGCTACAACGATCGCTCTTCAAGAGGTGGAGGCGGTGGTGGTTCCGATGGGAACTGGAG
GAATTAGATTTTCTGTTGGCTTTTTAGATTGGTCTCGTCTGAACTTACTTATGGTTTCGAAGTTTGATTGAAGTTACGTTTATGGTTTTG
CCGTGGTTACTGTTAGTGTTCTCGTTTTTGACCGCTATTGTTACCGTGATGTTACCCTGTGGATCCTTGTTTACAAAGTTCTCATGAATG
GAAGTGAATGGAGATTTATTAATTATAGTCCAAAAAAAAAATCTCCTGTTTGTTTCATCATCTTTGTTAAGCCATTGTCTAGTTGTCTAG
CTGTTTTTGTTGGTTTACATCAAGTGTCCATCCACATTATTAGCTGTGGCCTATTAGTGGTATTGACTAGTAGTGGTCTCGAGTCAACAT
TCCGCTATCATATCAAGTTATCTTCATGGTTCCTCTAAATATCTTCTTGGTTTAGATTCATGATCGAACACGTTTGTTAGACAATCAGAT
ACTGCAGTAGTTTACTTTTAGTATTAATGCCTAGATTTGGTAGATTTTCGTCAAAACTTTTGAGCGTATGAGTGTCTAGCATCAGTCTCA
AGTCTTTGGTGCATTTTAACTAGTGATTATATCTTGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	20
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	15
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	9
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (115)

Alignment image suppressed for unigene with 115 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118414	Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	322
5	129625		18

Preceding Unigenes (1)

Unigene	Build
SGN-U213434	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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