Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577671 in the current build, Tomato 200607 #2

Unigene SGN-U313033

Unigene Basic Information

Unigene ID:	SGN-U313033
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313033
mRNA sequence:	Length: 1634 bp

>SGN-U313033 Tomato 200607 #1 (50 members)
AAAAAAAGAAAAAAATCATTTCAAGATTTTGAATTGCTCTAATTTTTTTTTCCTCTGAAATTTGCTCTGTTCAACTCATAGTAATCGCGT
TGGTGTATCGATAATGAATCGGACCAAAATCAAGCGTAGAGTTGGTAAATATGAAGTTGGAAGGACAATTGGTGAGGGAACGTTTGCGAA
AGTCAAGTTTGCAAAGAATTCAGAGACGGGAGAAAGTGTGGCGATCAAGATCCTCGATAAAGATAAGGTCCTTAAGCACAAAATGGCTGA
ACAGATAAAGCGGGAAATAGCTACAATGAAGTTGATCAGACATCCTCATGTTGTACAGTTATACGAGGTTATGGGAAGCAAGACGAAGAT
ATTTATTGTTTTGGAGTTCGTTACAGGTGGAGAGTTATTCGATAAAATTGTAAATCATGGACGAATGCGTGAAGAAGAGGCAAGGAAGTA
TTTTCAGCAACTTATTCATACGGTTGATTATTGCCATAGTAGAGGAGTCTATCACCGAGATCTAAAGCCTGAAAATTTACTGTTGGATTC
TTCGGGTGACCTTAAGGTATCTGATTTTGGATTGAGTGCTCTATCCCAGCAAGTCAGGGCTGATGGCTTACTGCATACCACCTGCGGAAC
TCCTAACTATGTTGCACCTGAGGTACTGAATGATCGAGGATACGATGGGGCAACAGCAGACCTCTGGTCGTGCGGAGTCATACTCTTTGT
ACTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATGAACCTCTATAACAAAATCTCTGCTGCTGAATTTACGTGCCCACCTTG
GATCTCTTTTGGTGCTATCAAGTTGATTACTCGCATCTTGGATCCGAATCCTACGACACGTATTACCGTGCCTGAAATTTTGGAGGATGA
ATGGTTTAAGAAAGATTATAGACCACCTGTTTTCGATGAAATAGAAGATGCAAACCTGGATGACGTTGAAGCAGTCTTCAGGGACTCTGA
AGAATATCACGTAACGGAAAGAAGAGAAGAGAAGCCAACTTCCATGAATGCTTTCGAGTTGATTTCTATGTCACAAGGTCTTAACCTTGG
CAATCTCTTCGACGAACAGGGATTCAAGAGAGAGACAAGGTTCACGTCTAAATGTCCGGCTAATGAGATAATCAGTAAGATTGAAGAAGC
TGCTAAGCCTCTCGGTTTTGACGTTCACAAAAAGAACTACAAGATGAGGCTTCAAAATCTGAAAGCCGGTAGAAAAGGGAACCTTAACGT
TTCCACTGAGGTGTTTCAAGTTGCTCCTTCTCTTCATATGGTCGAGGTGCGGAAGTCAAAAGGAGACACTTTGGAATTCCACAAGTTTTA
CAAGAATCTTTCAACCTGCCTAGATAATGTTGTATGGAAAACTGAACAAGACATGGAAGAAAAAAAATGAAGAGCAATTTCTTATTGTTT
TATTTTTTTTTTTCAAAATTTTGGGACCATATTTTTAAGGTTTTACCAATTGTTTTATTAGGGGTAGGTGTTTTATTAGACAAAAATAGT
AGAATTTGCTTCAATTCAAATCAAGTTTGTATTGATTTGTATCACTTTTTTGAAAAATTGTGATTGCAATTGTATACAATATATTGGATT
TTTCGGAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	13
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	10
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (50)

Alignment image suppressed for unigene with 50 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 4 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128941	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	167

Preceding Unigenes (1)

Unigene	Build
SGN-U213274	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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