Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U574380, SGN-U574381, and SGN-U594426 in the current build, Tomato 200607 #2

Unigene SGN-U313286

Unigene Basic Information

Unigene ID:	SGN-U313286
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313286
mRNA sequence:	Length: 1309 bp

>SGN-U313286 Tomato 200607 #1 (71 members)
GTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCA
TTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTAT
CGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAA
TCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGA
TATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGG
AAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCATATAATATTCACTGGAACT
ATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGTTGATGTTG
TTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTG
ACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGGCACTC
TCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACA
AGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTG
TATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGG
TGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCA
TTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTAAAAAAAAAA
AAAAAAAAAAAAAAANNCCCCGGGGGGGGGGCCGGGACCCCATTTCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	10
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	120490	Inorganic pyrophosphatase - Molecular Function: magnesium ion binding (GO:0000287) - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: phosphate metabolism (GO:0006796)	9
5	130777	Inorganic pyrophosphatase - Molecular Function: magnesium ion binding (GO:0000287) - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: phosphate metabolism (GO:0006796)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U213460	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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