Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U565223, SGN-U565224, and SGN-U587735 in the current build, Tomato 200607 #2

Unigene SGN-U313329

Unigene Basic Information

Unigene ID:	SGN-U313329
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313329
mRNA sequence:	Length: 1203 bp

>SGN-U313329 Tomato 200607 #1 (91 members)
AGACGTATTCGGGTCGGGCCGGCCGACAAGAGGGAAAATTCAACTTTGGTACCAACTGTATCAGTATATATGTTAGTACCAGATATTCCG
TCTTTGTTGATCATTTCTGGCAGTACGAAGATTTGATATTGATATGGCAGGGAGTGGGGAGGAATCAAAGAAGTTGCAGCTCTACTCATA
TTGGAGGAGTTCATGTGCATTTCGTGTTCGAATAGCTCTCAATTTGAAAGGATTGGATTATGAGTATAAAGCTGTTAACTTGCTTAAAGG
AGAACAAAGGGACCCTGAATACTTGAAGCTGAATCCCCTTGGATATGTGCCCACATTGGTGGATGGAGATGCAGTAATAGCAGACTCTTT
TGCTATCTTAATGTATCTGGAAGAGAAGTATCCCCAGCGAGCATTGTTGCCTCAGGATTGTCAGAAAAGAGCAATCAACTATCAGGCTGC
AAACATTGTTTCGGCAAACATTCAGCCTCTACAGAATCTTGCTGTACTCAAGTACATCCAGGAAAAAATTGGCCCTGATGAGACAACCCC
TTGGGTTCAAGGTCATATAACAAAAGGCTTTGAAGCACTTGAAAAGCTACTTAAAGATTATGCTGGGAAGTATGCAACAGGAGATGAAGT
TTACATGGCCGACTTGTTTCTGGCACCTCAGATCCATGCAGCAATCAAGCGTTTTGAAGTTGACATGAATCAATTCCCTACTCTGTTGAG
GGTATTTGAGGCTTACCAAGAGCTGCCTGCTTTCCAGGATGCTATGCCAGAAAAACAGCCTGATGCCACATGCTGAAGGCCATCCATCAT
CTATGAAGTTCCCTTCTCAAACCCTTGGCATAACTGGAGTTGCATTTTGGCAGAATTGTTAGCTGTTTGCTGCACATTCTATTTCTGAAT
GCATTTGCCTTTAGTAAACTTCTATACGATGAATAAATGTAGAGCTGTCAGTGGCACACTTCTTTACGATGAATACATGTAGAGCTGTGT
AACACTTGCAAACTTCTTTACAGTGAATAATGTAGAGCCGTGTAATACTTCAGTTATGGCACAGTCACGAGTTACTGAAGTACAGATAGT
GAAAATGGTGTTGTACTACCTATGTTAAGGAACCTAGGATGAACATTCCTCCGTCTATTTGAGATATTATAAAGTTGCCTGCATGTTGAA
AAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	20
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	7
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	21
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3

mRNA member sequences (91)

Alignment image suppressed for unigene with 91 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119813	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Maleylacetoacetate isomerase - Molecular Function: catalytic activity (GO:0003824) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family metabolism (GO:0009072) Glutathione S-transferase N-terminal Thioredoxin-like fold	12
5	130279	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Maleylacetoacetate isomerase - Molecular Function: catalytic activity (GO:0003824) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family metabolism (GO:0009072) Glutathione S-transferase N-terminal Thioredoxin-like fold	11

Preceding Unigenes (1)

Unigene	Build
SGN-U213563	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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