Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580842 in the current build, Tomato 200607 #2

Unigene SGN-U313386

Unigene Basic Information

Unigene ID:	SGN-U313386
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313386
mRNA sequence:	Length: 1122 bp

>SGN-U313386 Tomato 200607 #1 (43 members)
CGGCCGAATTGATTTTTATTTTTTTATATTTTGATGTTAAAGTTCTGGCTTGGCCAACTTAAGGCATCTACACCCCTATATATACTTCGT
GTATGTATATACAACAAGCAAATCAATACTTTGGCAATTTTGAGATTTTTTTTCTTAATTCATACAAAATAAAATGGCTAATGATGAGGT
GATTCTGTTGGATTTTTGGCCTAGCATGTATGGTATGAGGCTAAGGATTGCACTTGCTGAGAAAGAGATTAAATATGAGTACAGAGACGA
GGATTTGAGGAACAAAAGTCCTCTGCTTTTGCAGATGAATCCTATTCACAAGAAAATCCCTGTTTTGATTCATAATGGCAAACCAATTTG
TGAGTCTATCATTGGAGTTGAGTATATTGATGAAGTGTGGAAGGATAAAGCCCCTTTGCTCCCTTCTGATCCTTATGAGAGAGCACAAGC
TAGGTTTTGGGCTGATTACATTGACAAGAAGTTATATGCTACAGGAAGCAAGATTTATACAGCAACGGGAGACGAACAAGAGGCAGGTAA
GAAAGATTTCGTAGAAATCCTTAAAGTGTTGGAGGGAGCACTTGGAGAGAAGCCTTATTATGGAGGAGATAACTTTGGTTTTGGGGATAT
TGCTCTCATTGGGTTCTACTGCTGGTTTCATGCTTATGAGGTTTATGGTAACTTCAGCATTGAGGCTGAGTGCCCAAACCTTGTGGCTTG
GGCCAAGAGGTGCATGCAAAGGGACAGTGTGGCTAAAACTTTGCCTGACCAACATAAGATCATTGAGTTTGTAAAAATTCTTAGGGAAAA
GCTTGGACTTGAATAAATAAACATATGCATATCATAGTAGTATTGAAGAAAGGCACTTCATTCTGCCTTTATCTTGTGTTGTTTCAAGAT
TTGAAATGTTTGTTTGGTTATAGTGTAAGTTCTATTTCTAATAGTAATAAAGGATAAGCTTGTGTCTTGTTAAAAAAAAAAAAAAAAGAT
GAGAAGTAATTACTTTTTTTTTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGG
GGGGGCGGGACCCATTTTCCCCTAAAAGGGGGAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY082341	glutathione S-transferase AY082341	glutathione S-transferase

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	13
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (43)

Alignment image suppressed for unigene with 43 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	118441	Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	150
5	129003	Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	70

Preceding Unigenes (1)

Unigene	Build
SGN-U213822	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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