Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577430 in the current build, Tomato 200607 #2

Unigene SGN-U313396

Unigene Basic Information

Unigene ID:	SGN-U313396
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313396
mRNA sequence:	Length: 2232 bp

>SGN-U313396 Tomato 200607 #1 (86 members)
TAACTCTAATCGTCATCGAACTTTCCAGAACCTCAAACCAGAACCTACAAGAACCCTCTAGTCCCCACTACCACACAAACCCCTCTTTTA
TAAAGCCCTAAAAACTCAAAATCTTTAATCCCTTCACTCCAATTCTTCTTCAGATTTCTTCAAATAAATTCCTGTAAATCAGCAGCCATG
GCTGATGAAGCTAAGGCCAAAGGTAACGCAGCTTTCTCCGCCGGCAATTTCACCGACGCTATTAACCATTTCACTGAAGCCATCAATCTT
GCTCCCACCAATCATGTTCTTTACTCTAACCGATCTGCTGCATACGCTTCATTAGGGAAATATTCCGATGCTTTATCCGATGCACAGAAA
ACAGTTGACCTAAAACCCGATTGGGCGAAAGGGTATTCTCGTTTGGGTGCCGCACATTCTGGACTTCACCATTATGAAGATGCGGTTTCT
GCTTACAAGAAGGGGCTTGAGATTGATCCGAATAATGAGGGTTTAAAATCGGGTCTTGCTGATGCTCAATCAGCTCAGGCTCGATCTCGT
GGTCCGGCGGTTCCGCCCAGCCCGTTTGGTGATGCGTTTTCCGGTCCGGAGATGTGGACTAAGTTGACTGCGGATGCGAGTACAAGGGGT
TATTTGCAACAGCCTGATTTTGTTAACATGATGAAGGATATTCAGAAGAACCCGAGTAATTTGAACCTTTATTTGAAGGATCAGAGGGTA
ATGCAAGCACTTGGAGTTTTGTTAGGTGTGAAATTGTCGACGAGGATGCCAGAGGAGGACGATGAGATGCCGGAAGCTTCAACGGAGAGG
AAGAGACCAGCAGAGACGGAGCATGTGAAGGAGGAGAAGCGTCCCGAGCCTGAACCAGAGCCGGAGCCAATGGAAGTGTCTGAGGAGGAG
AAGGAAATTAAAGAGAAGAAAGCGAAAGCACAGAAGGAGAAAGAGGCGGGTAATGCAGCTTACAAAAAGAAGGATTTTGAGACTGCAATT
CAGCACTACACTAAGGCTATTGAGCTTGATGATGGAGACATATCCTTTATTACTAACCGCGCTGCTGTCTACTTGGAGATGGGAAAGTAT
GAGGAATGCATCAAAGATTGTGACACAGCTGTTGAAAGAGGGCGAGAGCTAAGGTCCGACTATAAGATGATCGCAAGGGCTCTGACTCGC
AAGGGAACTGCCTTGGCAAAGTTGGCTAAAAGTTCAAAGGATTTTGAAGCTGCAATTGAGGTTTTCCAGAAAGCTCTGACCGAGCATCGC
AATCCGGATACCCTTAAGAAACTGAATGAAGCTGAGAGGGCGAAAAAGGAATTGGAGCAGCAAGAGTATTTCAATCCACAAATAGCAGAC
GAAGAGCGTGAGAAAGGAAATCAGTTATTCAAGGAGATGAAGTATCCAGAAGCAGTTAAACATTATACTGAATCAATAAAGAGGAATCCC
AAAGACCCGAAGGCTTATAGCAACCGGGCTGCCTGCTACACCAAGCTAGGTGCATTACCCGAGGGGCTCAAGGATGCTGAGAAGTGCATT
GAGCTCGATCCAACATTCGTAAAGGGTTACACCAGGAAGGGTGCTGTTCAGTTTTTCATGAAAGAGTATGAAAAAGCTTTGAAAACTTAC
CAGGAAGGATTGAAGCTTGATCCTCAGAATCAGGAACTCCTAGATGGTGTTAAGAGATGTGTTGAGCAAATAAACAAGGCAAGTCGTGGA
GATCTGACTCCAGAGGAGCTCAAAGAAAGACAGGCTAAGGGGATGCAAGATCCAGAAATTCAAAACATCCTTACGGACCCAGTAATGAGA
CAGGTGCTAAGTGACTTCCAGGAGAACCCAAAAGCTGCACAAGATCATATGAAGAACCCTCTTGTAATGGACAAGATCCAGAAATTGATT
AATGCAGGAATTGTCCAAGTTAGATAAGTAGCAATACTTACAACTCACCAGGGAATGTAGCTTTGGACTATCCATTCTTTTTTTCCATCC
TTTGTTTGCTTAAAATTGTTCTTCACTTTCGAAGTGTAACGGCGCACAGTGTTTGGGTTTCTTATCTCTTCTTTTCCTTTTTTTCTTCTG
TGGTAACTTTTTAAGATTTTATATCTTGTTTTCCTTGAAGGGGGTCAGAAAGAAAGAAAGGAGGATTGCTGGCAAAAAAAAAAAAAAAAT
GTTGTGCTTCCGGTCAATTTCTAGTCATTTCATCACTATATTTCAAAAACATTGTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	21
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (86)

Alignment image suppressed for unigene with 86 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101370	Jacalin-related lectin	591
2	119765	Tetratricopeptide TPR_1 Tetratricopeptide TPR_2 Protein prenyltransferase Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	12
5	130216	Tetratricopeptide TPR_1 Tetratricopeptide TPR_2 Protein prenyltransferase Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	11

Preceding Unigenes (1)

Unigene	Build
SGN-U213490	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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