Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581258 in the current build, Tomato 200607 #2

Unigene SGN-U313399

Unigene Basic Information

Unigene ID:	SGN-U313399
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313399
mRNA sequence:	Length: 827 bp

>SGN-U313399 Tomato 200607 #1 (78 members)
AATCGGCCGAATTGATTGTGCGTTAGTTTTACGAAGAGCTAAGGACTTGTTTGGTGTTATTTTTGATTTTTTGATTTCTAATATCTTTGA
GAATGGCCACTTCATCTGAGGAAGGACAAGTGATCGGCTGCCACAAGGTTGAGGAGTGGAAGGTGCAGCTCCAGAAGGGTGTGGAGACCA
AAAAACTGGTGGTGGTGGATTTTACTGCTTCCTGGTGCGGTCCTTGCCGTTTTATTGCCCCAATTCTTGCTGACATTGCTAAGAAGATGC
CCCATGTTATGTTCCTCAAGGTTGATGTTGATGAACTGAAGAAAGTTGCAGAGGAATGGAATGTGGAGGCAATGCCAACTTTTGTCTTCA
TTAAAGAGGGTAAAGAAGTGGATAGGGTTGTTGGTGCCAATAAAGACGGATTGCTTCAGACCATAGAGAAGCATGGTGCTGCTCCTGCTG
TTGTGACTGCTTGAGCCTTAATATTTAGTTTTGTCTTCTGTAATAACTCTGGATGGTTGTTTTTTAATTACCCACCATTTTTTTACTGCT
TTCTTGAAAGATTTGTTATGTTGGTGTTTGGAATCTGACATTTGTGCATATGGTGTTTGCTGGTGTAAGGCTATATGTCCATTTCTATCA
AAAGACTCTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTTTGGTTTTTGTAGATTATCAACATCTAA
GGTCACCTTTGAGCAGGTGTGAATTGAAAGAAGTGTACTAAGTACACTTTTTTGAAANAAAAANAAAAANAAAAAAAAAANAAAAAAAAA
AANAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	14
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	14
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	14
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (78)

Alignment image suppressed for unigene with 78 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101384	Thioredoxin-like fold	404
2	118571	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	51
5	129154	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	35

Preceding Unigenes (1)

Unigene	Build
SGN-U213579	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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