Sol Genomics Network

Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571690 in the current build, Tomato 200607 #2

Unigene SGN-U313405

Unigene Basic Information

Unigene ID:	SGN-U313405
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313405
mRNA sequence:	Length: 2222 bp

>SGN-U313405 Tomato 200607 #1 (53 members)
GAGAGATAACTAGTCTCTTTCCTCTTCCTTTAATAAGGTCTCTCCCTTCACTACTGTACTAGGAGCTCAAACAATCATCAACTCAGTATG
TATGGGAGGGATCCATGGGGAGGTGCATTAGAAATTAATGCAACAGATTCAGCAACTGATGATGATCGGAGCAGGAACTTGCAGGATTTT
GATAAAGCAGCTTTGTCACGAAATTTAGATGAAACGCAGCAAAGTTGGTTATTAGGTCCTACAGAGCAAAAGAAGAAGAAATATGTAGAT
CTGGGTTGTATTATTGTTAGTAGAAAAGTATTCAAATGGACTCTCGGATGCATTATTGCAGCTGCACTTATTGCTGGATTTGTTACTCTT
ATTGTTAAAACTGTACCTAAGCACCGACACCATAATCCTCCACCAGATAACTACACTTTAGCTCTTCGTAAAGCTATCATGTTCTTCAAT
GCACAGCGCTCTGGGAAACTTCCTAAGCATAATAATGTATCATGGAGGGGGAGTTCAGCTCTACAGGATGGGAAATCCGATGGTTCCACT
ACCTTTAAGAATTTGGTTGGGGGTTATTATGATGCAGGAGATGCCATCAAGTTTAATTTCCCTCAATCTTTTGCTTTAACTGTCTTGAGT
TGGAGTGTGATTGAGTATCCTGCAAAATATGAAGCTGCTGGAGAGCTCACTCATATCAAGGATGTTATCAAGTGGGGAACTGATTATCTC
TTGAAAACATTCAATTCCTCAGCTGATACCATTGATCGACTCGTTTCACAAGTGGGGATAGGGGATACCTCAGGAGGACCAGATCCCAAT
GATCACTATTGTTGGGTGCGTCCAGAAGACATTGATTATCCACGGCCTGTAACTGAATGTCACAGTTGCTCGGATCTTGCTGCCGAGATG
GCTGCTGCACTGGCTTCTGCTTCCATTGTATTTAAGGACAACAAAGTGTACTCACAAAAGCTTGTCCATGGTGCTAGAACTCTGTTCAAG
TTTGCCAGGGAACAACGTGGTAGATACAGTAGCGGAAATGAAGCTTCAATTTTCTACAATTCGACTAGTTATTGGGATGAGTTTGTGTGG
GGTGCATCCTGGCTATATTATGCTACAGGAAATACTTCATATCTTCAGCTTGCTACGACTCCTGGTATCGCCAAACACGCTGGTGCTTTC
TGGGGAGGTCCTGATTATGGCGTGTTCAGCTGGGATAATAAGCTCTTTGGAGCACAAGTGCTTCTAAGCCGTTTGAGATTGTTTTTGAGC
CCTGGATATCCTTATGAAGAAATTTTGAGTACGTTTCATAACCAGACAAGCATAGTCATGTGCTCATTCTTGCCATTCTTCACTTCATTT
AATCGAACGAAAGGTGGGCTGATAGAATTAAACCATGGAAGGCCTCAGCCACTTCAGTATGTAGTCAATGCTGCCTTCCTGGCTACCTTG
TATAGTGACTACCTTGCAGCAGCCGACACCCCTGGATGGTATTGTGGACCTAATTTCTACTCCACCGATGTCCTACGTGAATTTGCACAG
ACTCAGATTGACTATATCCTTGGCAAGAACCCCAGGAAAATGAGTTATGTTGTTGGCTTTGGCAATCACTATCCAAAACGTGTCCACCAT
CGAGGTGCATCAGTTCCTAAAAACAAGGTCAAGTATAATTGTAAAGGAGGGTGGAAATGGAGGGATTCATCTAAGCCTAATCCCAATATT
CTTGTTGGTGCCATGGTTGCTGGACCAGACAAGAATGATGGTTTCCATGATGTTCGTACTAATTACAATTATACCGAGCCAACACTTGCC
GGAAATGCTGGGTTGGTTGCAGCCCTCGTAGCTCTATCTGGAGATAAAAGTGTTGGAATTGACAAGAACACGATATTCTCTGCAGTACCA
CCCATGTTCCCTACTCCACCACCTCCGCCAGCTGCTTGGAAACCATAATTTGTTGATCTTATCAACCCCAGTCTTTTGTGTTGTCTATAG
ATTCATTTTTTCATAATGTGGGGGATTCTGGCTCAGACAAGTTTGAAGAAACAGGAGATGAGCGCACCGCGAATGTTGAACTCAGCCTGG
TCTTGAATCTAGAGGTTGAACAAGTGTTTGTTATTTGCAATGTATCAACAATATATACACAGTTTGTATGTATGTAACAAACCAAACCAA
TATATTTGTTTTCAATAGATGTGCCACAGTTATGTGATGTTTGATCTAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101447	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	149
2	118491	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	84
5	129323	Glycoside transferase six-hairpin subgroup Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	25

Preceding Unigenes (1)

Unigene	Build
SGN-U214839	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer