Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U571688 and SGN-U571689 in the current build, Tomato 200607 #2

Unigene SGN-U313407

Unigene Basic Information

Unigene ID:	SGN-U313407
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313407
mRNA sequence:	Length: 1120 bp

>SGN-U313407 Tomato 200607 #1 (4 members)
AAGGCCTCAGCCTCTCCAGTATGTAGTCAATGCAGCCTTCCTGGCTACCTTGTTTAGTGACTATCTCGCAGCTGCCGACACTCCTGGATG
GTACTGTGGACCAAATTTCTACTCTACTGATGTCCTGCGTAAATTTGCAGAAACCCAGGTAAATGAATCTCCCCTAGTAAGAGTCTCTTT
TCTTATTCTTGGGTTCTATCTTGTCAATGGTTGTTGTTTATGCTATTCCACAACCAACTTCCCTTCTCCCTGCTTCATGTTTTGGGGACA
ATAGGGACAAATATGAATGATAATTTGCCGCTAGGGTGTGTAGAATATTAGAGATACGATATACACAAGTTTTCTTTTGCCTATTCTGTT
GTAAGGTGAAAATCATTTCTTGGTTTTAACTTGGACGTTTCTTTGACCTTGTAGATTGACTACATCCTTGGGAAGAACCCCAGGAAAATG
AGTTATGTTGTTGGCTTTGGCAATCACTATCCTAAGCATGTCCACCACAGAGGGGCATCAATTCCTAAAAACAAGGTCAAATATAACTGT
AAAGGTGGATGGAAATATAGGGATTCATCTAAGGCTAATCCAAATACTATTGTTGGAGCCATGGTTGCTGGACCAGACAAGCATGATGGT
TTCCGTGATGTCCGTTCTAATTACAATTATACGGAGCCTACTCTTGCTGGAAATGCTGGTTTAGTTGCAGCTCTCGTGGCTCTATCTGGA
GATAGAGATGTCGGAATTGATAAGAACACTTTATTCTCTGCAGTACCACCCGATGTTTCCCACTGCACCACCCTCCCCAGCTCCTTGGAA
ACCATGATCTTTAATACGTCGTTTGTGCCTCCCTCATCTGAGTGTAGGTTCTTTATTTTTGATATTAGATTCTGAGACAAAGAAGCTAGA
TGAAACTTGGATGTGCACACCCTTGAACATAGATAGTAGTTTGGGCATTATTAGGACACTAGCAAGTGAAATTCTTCAAGAAATGCCCAA
TGCATGTCTGTTTTACTTTGATGTATCATCTACACACACTATGAATGTAACGTAACCAATCATGTATTCTTTGAACAGTGTAATCTCAAT
TTCCTCGGAACAAGTTCTCACATAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cel3	endo-1,4-beta-glucanase (Cel3)

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1

mRNA member sequences (4)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101447	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	149
2	118491	Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	84
5	129323	Glycoside transferase six-hairpin subgroup Six-hairpin glycosidase Glycoside hydrolase family 9 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975)	25

Preceding Unigenes (1)

Unigene	Build
SGN-U216908	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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