Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572172 in the current build, Tomato 200607 #2

Unigene SGN-U313485

Unigene Basic Information

Unigene ID:	SGN-U313485
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313485
mRNA sequence:	Length: 1951 bp

>SGN-U313485 Tomato 200607 #1 (53 members)
ACTAGTTCTCTATCGTCTCTACTTGTATTCAGAGCTCTGTGACATGATAGATGGGGTGAAACAACAGCTCTCGGCTCTTAGAAGCCTCTG
AGTTTCCATCTGCATTGGGGTTATTCTGTTTTCTACATCATGATTTCAAATTTGCAGCTCATAGAGCATTTAAGTTCTCGTGCCAGATGC
ACGATGAAGTAACAGTAATTAAGAATGTTGTGCTACTGAAGCACGGCCTTGTTGCAGACGGTTGAACTCTGAAACAAGGTTTCGTGCCTG
TAAATAGAAAATTATCATATCAGCAGGAGTGTTACTTATAGTATAAATTAGTAGGATTGTTTGTTGAAAATGGTGAAAAATGGAAATGTA
GTGATGCAAAAATATGAATTGGGGAGATTATTAGGTCAAGGCAACTTTGGTAAGGTTTATTATGGAAGGGATCTGGAAAGCGGACAAACT
GTAGCCATTAAAGTAATTGATAAAGAGAAGGTTCAGAAAGCTGAATTGACTGAACAGACGAAACGAGAGATATCCGTTATGGCAATGGTC
AAACATCGACATGTTGTGCAGCTATACGAGGTCATGGCAACCAAGAGTAAGATTTACTTTGTGATCGAACATGCCAAAGGTGGCGAGCTT
TTCAACAAACTGACAAAGGGGAGGCTCACAGAAGATGTTGCTAGAAAGTTGTTTCAGCAACTGATCAATGCAGTTGAATTTTGCCACAGC
CGAGGTGTTTATCACCGTGATCTCAAACCGGAAAATCTCCTACTGGATGAGAATGGAAACCTAAAGGTCTCAGACTTTGGTTTGAGTGCA
TTAGCAGAGTCTAAGCGACAAGATGGGTTACTCCACACAACCTGTGGTACACCAGCATATGTTGCTCCCGAGGTGATTGGTAGAAAAGGA
TATGAGGGTGCTAAAGCTGACATCTGGTCTTGTGGGGTGATTTTATTTGTCTTGTTGGCTGGTTATCTTCCATTCTATGACTTAAATCTT
ATGAATCTGTATAGGAAGATATGCAGGGCAGAGTACAAATGCCCTAATTGGTTCCCTCTAGAAGTGCGTAAACTTCTCTCTAGGATCTTC
GACCCAAACCCTCGTAAAAGGATTTCAATCGCCAAAATTAAGGAAAGCTCCTGGTTTAAGAAAGGATTGGAATCTAGACATGTGGGAACT
AAACAAGTAGTGAACCAAAATGTTATTGCAGATGGTAATGCTGTTTCCAGTTCAAATTCGGAGAATAGTACCTCTTCCTCCGACACCAAA
TTAGAGTTGATAAAACCTGCAATCTTTAGTGCATTTAATATCCTCTGCCAGTTTAATTTGTCTGGTTTATTCATAAACAATGATCAAAAG
GAGGAGCTGCTTTTTACATCAGTGGAACCTGTCCCAGTCATCATATCCAAACTTGTGGAAGTTGGCAGGAGTCTGAACCTTGAAGTAAAG
AAGAAAGAAGGTGGATTTCTTATATTAGAGGGATTAAATGAGAGCAGATATGAGACCCTGTGCATTGGCGTGCAAATCTTTGAAATTTCC
GTATCCAATTACTTCATTGAACTGAGTAGGTCAAGTGGTGATGTGATTGATTACCAAAACATGTTGACGCAAACTATCAGACCAGCTCTT
GAGGAAATTGTTCTGGCTTGGCTAGGAGTGCAATCTTATCAATAGTAATTGTAGAATCACTGAAATGAAGCTTCTGATTTCGAGATGCTA
GCTGATCATACTTTGTATTAGTAGTTTAAACTAATTCTGTTTGTTTGAAGCGCTAGTTCTATTTGCTGCAAAAAAAAAAGGAAGCATGTT
ACTGCAAACTTTGATTATTTTCTCAGAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAANNATAAGGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCTGGGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	39
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (39)

Annotations (manual: 3 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128941	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	167

Preceding Unigenes (1)

Unigene	Build
SGN-U213441	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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