Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U585138 and SGN-U589107 in the current build, Tomato 200607 #2

Unigene SGN-U313550

Unigene Basic Information

Unigene ID:	SGN-U313550
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313550
mRNA sequence:	Length: 1433 bp

>SGN-U313550 Tomato 200607 #1 (61 members)
CAATAATTGAAGTTAGAGAGTCGTATAAAGAATTGGATCTATTTGTAGAGTCATCCTCAAAAACACTATTTTTATTTTCTTTGATTCTGT
GGTCTGTAAATCATGGCTACACAAGGTCAAGTCATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTGATTGAGGAT
GTGCAGGTGGCTCCACCGCAAGCCGGTGAAGTCCGGGTTAAAGTTTTGTATACTGCTCTCTGCCACACCGATGCTTATACCTGGAGTGGC
AAGGATCCTGAGGGTCTCTTCCCATGTGTTCTTGGTCATGAGGCTGCGGGGATAGTAGAAAGTGTTGGTGAGGGAGTGACTGAGGTTCAG
CCAGGAGACCATGTTATACCTTGCTACCAGGCAGAATGCAGAGAATGCAAGTTCTGCAAATCAGGAAAGACCAATCTTTGTGGTAAAGTA
AGGGCTGCTACTGGAGTGGGAGTTATGATGAACGACCGTAAGAGTCGATTTTCTATCAATGGAAAACCGATCTATCATTTCATGGGAACT
TCAACCTTCAGTCAGTACACTGTTGTCCATGATGTTAGTGTTGCAAAGATTGACCCAGTAGCTCCTCTGGAGAAAGTCTGCCTTCTTGGA
TGTGGTGTTCCAACTGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTTGAACCAGGTTCCATTGTTGCCGTCTTTGGCCTGGGAACAGTT
GGTCTTGCTGTGGCGGAGGGTGCAAAAGCTGCTGGTGCTTCACGAATTATTGGAATTGATATTGACAGCAAAAAGTTTGATAGAGCCAAA
AATTTTGGTGTGACTGAATTCATTAATCCCAAGGAGCATGAGCAACCCATTCAGCAAGTCATTGTGGATCTTACTGATGGTGGTGTTGAT
TACAGTTTTGAGTGCATAGGAAATGTCTCTGTTATGAGGTCTGCTTTAGAGTGTTGTCACAAGGGTTGGGGAACCTCAGTGATTGTAGGT
GTTGCTGCTTCTGGTCAGGAGATATCTACACGTCCATTTCAGCTGGTGACTGGTCGTGTTTGGAAGGGAACTGCTTTTGGTGGTTTCAAA
AGCCGATCACAAGTTCCTTCCCTCGTGGACAAGTATTTAAAGAAGGAAATCAAGGTGGATGAATACATCACTCATAACATGACACTTGCG
GACATAAACAAAGCTTTCGACCTGATGCATGACGGGGACTGCCTCCGTGTTGTCCTGGATATGTTTGTATGAATGAAGTCTGTAGGCTCT
TTATGTTGCTTACTTTCTGTTTTTGTGCTATTTCTCAGAGACTATTTACCTTTCCCCTTGCTAATTATGTGTTGAATAAAAAGAAAGTGA
GAAAAAAAGGATCAAGATGACAGATGAACTCTTTTTAAATGGATGGTAGTTTATTATCTTTTCAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	15
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (61)

Alignment image suppressed for unigene with 61 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118545	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	58
5	129056	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	51

Preceding Unigenes (1)

Unigene	Build
SGN-U213713	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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