Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U584186 in the current build, Tomato 200607 #2

Unigene SGN-U313579

Unigene Basic Information

Unigene ID:	SGN-U313579
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313579
mRNA sequence:	Length: 2792 bp

>SGN-U313579 Tomato 200607 #1 (14 members)
GCGGCCGCTATCCATCTTTGCTCTTCTATTTTCCCCTTCTCGATTTTCGATCATCACAGAAAATTTCTGAAGAAAATCCTCAAAGAAGCT
GAGAAAAATCAATAATCTTGCTAGAGAAGAAAAGGGGTTGAAGAAAAATTCGATCTTTTGTAGGAGATGGCTTTAATGCGCCTTCTAACT
CAGGTTGAAAGGCAACAATCTCAACTGAGGCATATTAGCTCTTTGTTCAATCGAACATATCTTTCCTCTGGACGGATCATAGGAAGTGAA
GTTCATGGAGTTGCAAATACCAAGCAAAGGTTTCAGTCTAGTTATGTGGGAAGTCTAGCCCGCAGAGTACGTGAAAGAGAGGAAACTAGT
AATGCTTCATTTCATAGAAGTGATCCAGAGGCAGTCATAAGGTCGTTTGAAAGCCAACCTTCATTGCATTCCAATCCAGCGGCAGTGTCG
GAGTATGTTAAGGCACTGGTAAAGGCTGACAGACTTGATGAAAGTGAGCTTCTCCGGACTTTGCAGAGAGGGATTGCTGGTTCTGCTAGG
TCTCATATGGAGGAAGAGAATATAGGGGCTCTGTCAGCTCTTAGAAATGTTGGGAAATCAACAAAGGATGGTGTTCTTGGTACTCGTAAT
ACTCCTATACATATGGTGGCCGTGGAAGGAGGTAACTTCAAAGAACAGTTGTGGCGTACATTCCGGTCTCTGGCTGTGGCCTTTCTCTTG
ATTTCTGGAGTTGGTGCTCTCATTGAAGATAGAGGAATCAGCAAAGGTATAAGAGGACTTGGTCTAAATGAGGAAGTGCAACCAACCATG
GAAACCAATACAAGATTTTCTGATGTGAAGGGTGTTGATGAAGCAAAATCTGAGCTGGAAGAAATTGTTCACTATCTCCGAGATCCTAAG
CGTTTCACTCGTCTTGGGGGCAAGCTCCCAAAAGGAGTATTACTTGTTGGCCCCCCCTGGAACTGGTAAGACCATGTTGGCGAGGGCCAT
AGCTGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGCAGTGAGTTTGAAGAAATGTTTGTTGGTGTCGGAGCTCGCAGAGTGAGAGA
CCTTTTTGCTGCTGCTAAGAAGCGATCACCATGCATTATATTCATTGATGAGATTGATGCCATTGGAGGAAGCCGTAACCCTAAGGATCA
GCAATATATGAGGATGACTTTAAATCAATTGCTTGTCGAGCTGGATGGCTTCAAACAAAATGATGGAATCATTGTGATTGCTGCCACTAA
TTTTGCTGAGTCACTGGATAAGGCTTTGGTGAGACCTGGACGATTTGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGGCGGAA
GCAGATTTTGGAATCTCACATGTCAAAGATTCTGAAGGCGGATGATGTTGACCTTATGATCATTGCTCGGGGGACTCCTGGATTTTCTGG
TGCAGACCTTGCAAACTTGGTGAATATCGCTGCTGTGAAGGCTGCTATGGATGGTGCCAAAGCCGTAAGCTTGGCTGATCTAGAGCATGC
GAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTTATATCCCAAGAGTCGAGAAAACTCACAGCATACCATGAAGGTGGGCA
TGCACTTGTAGCTATTCATACAGATGGGGCTCTTTCGGTGCACAAAGCAACTATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCA
ATTGCCTGAAAAGGACGAGACTAGCATCTCCCGTAAGCAGATGCTTGCACGACTTGATGTTGCCATGGGTGGGCGAGTTGCTGAAGAGCT
CATTTTCGGGGAAAGTGAAGTAACTTCTGGTCCATCTGATGATCTCAAGCAAGCAACCAAGCTAGCCAGAACCATGGTCACCAAGTTTGG
TATGAGCAAAGAAGTTGGGCTCGTTACCCATAACTACGACGATAATGGGAAGAGCATGAGCACTGAGACTAGACTTCTAATCGAGAAGGA
AGTAAGAGAATTACTTGAAAGGGCTTACAACAATGCGAAAACTATTCTCACTACCCATAATAAAGAACTTCATGCTCTTGCTAATGCATT
GCTTGAGAAGGAAACACTAACCGGAGGTCAGATCAAAGCCTTGCTTGCCCAGGTCAAATCTCAACAAACTCAGCAGAAGCAACATCAATC
AGTATCAGTTGAAAGTACACCACAGTCCAATCCAAGACCTCCACAGAGTCCAAGTGCAGCAGCAGCTGCGGCCGCTGCTGCAGCAGCCGC
TGCAGCTACAGCTGCTGCTAAAACCAAAGGCATTGCTCCAGTAGGATCTTAGCACAGAAAATGTTGGTAAACCATTTATCAGTTTTATGT
GCATATAGTCTATTATCTTCGTGCAAGCCTTTTACCCTTTTGAGAATCATTGTTGAGCTGCTGTTAGCGAAGGTGAAGTTGAGTTCAAAA
TGTTTTGTTAACAGATTAACGGCAGTTTCATCGTGTTATTTTTAGTGTATCGCTTATATTTAACTCTCGTTAGACCTCTTAATTCCCGTG
TCATCGTATAACATAGACGGGCATAGCCTTTCCAAGTCAGATTTTAGCTTCTTTTTTTTCTTCCTTTCCTTGCTCATCTTCATTGGATAT
GTAGTCGTCCCACCAGAATGATGTATATTTTCACAGTGCAAGAACTTGGTTGTTCCATATTTGCACTCACTATACTGCTCTTCCTATATG
AAATGAAACTAGCAGATTATTAGCTTGCTTACTAATGTAACAAAAAAGCAGTTTGACACTGTTAAAATATCACCAGTTGTTGCTCTGAAA
AA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ftsh	FtsH protease	protease

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 10 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	131838	Peptidase S16 lon protease - Molecular Function: ATP-dependent peptidase activity (GO:0004176) - Molecular Function: serine-type endopeptidase activity (GO:0004252) - Biological Process: proteolysis (GO:0006508) AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) Peptidase M41 - Molecular Function: metalloendopeptidase activity (GO:0004222) - Molecular Function: ATP binding (GO:0005524) - Biological Process: proteolysis (GO:0006508) Peptidase M41 FtsH - Molecular Function: metalloendopeptidase activity (GO:0004222) - Cellular Component: membrane (GO:0016020) - Biological Process: protein catabolism (GO:0030163) AAA-protein subdomain - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	6

Preceding Unigenes (3)

Unigene	Build
SGN-U220381	Lycopersicon Combined #3
SGN-U222040	Lycopersicon Combined #3
SGN-U228630	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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