Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568737 in the current build, Tomato 200607 #2

Unigene SGN-U313648

Unigene Basic Information

Unigene ID:	SGN-U313648
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313648
mRNA sequence:	Length: 1917 bp

>SGN-U313648 Tomato 200607 #1 (71 members)
CGGCCGAATTGATAGCAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGT
GGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGT
TCCTCAACAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAA
CAGCTTGGATGAACCTTTTCTACTTTCCTGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCC
AATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAA
AGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCT
CATTGGAGATTGGTACAAAAAGAACCACACGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTAT
CAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTC
ATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGT
CCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCC
AGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGA
CTGGTCCCTTAATCAGGCCCGCTCCATCAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTAT
GATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGT
GCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGG
AATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTG
GCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGC
AGTTTCACGTTGCACAACTCAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGAC
TGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCC
AAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAA
TTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCA
TTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGA
ATTATCGTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z94058	pectinesterase	pectinesterase

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	8
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

Preceding Unigenes (1)

Unigene	Build
SGN-U213559	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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