Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580907 in the current build, Tomato 200607 #2

Unigene SGN-U313672

Unigene Basic Information

Unigene ID:	SGN-U313672
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313672
mRNA sequence:	Length: 1859 bp

>SGN-U313672 Tomato 200607 #1 (43 members)
AGAGAGCAAATATCCACCGTCTCTGTCTCCATTATTTAAACTCCCAATGCCCAACCCTTCCCTTCCCACTTTCACTTCCCCTGTTTTTCT
GTTTAAAAAAAAAAATGGAAGGAAAAACTATTTCCCTTTCCTTCCTTTTACTTTCTCTCTTAGCCATTTCTGTCTCTTCCACTTCTCTTC
AATACCATACATTACTTTTACATTCCCTTCCACTAACTCAACTTCAAAAATCTCTACATTTCGATGCTCAACTACTTTCCGGCGATGGCT
CCGACCTCGATCCGGATAATGCTCTCTCTCTACAGTTGCATCATGTAGACTTAGTATCTCCTTCGTCCTTCAATGCTACACCACATGCGC
TGTTTAAGCTCCGTCTACAACGTGACGCCTATAGAGCTAAGGCAATTTCTGACCTCGCCTCTGCTAACGCCACCGTTGGACGCCGTGCGG
GTAAGCCTCATCCTGGTGGTAGGGATTTCTCTAGTTCTGTTGTTTCTGGACTGTCTCAGGGGAGTGGAGAGTATTTCACGCGAATCGGTG
TTGGTACTCCTTCTAAGTATGTTTATATGGTGTTGGATACGGGAAGTGACGTCGTTTGGATCCAGTGTTCGCCTTGTAAAAAGTGCTACA
CTCAATCCGACCCGGTTTTTGACCCGAGTAAATCGTCTTCCTTCCTTGGTGTTGCATGTGGGTCGCCTTTGTGTCGTAGGTTGGATTCTG
GTAGCTGTAACCGAAAGAAATGTCTTTATCAGGTTTCTTACGGAGACGGTTCTTTCACCGTCGGCGATTTTTCAACTGAAACGTTAACTT
TCAGGGGGACACGCGTGAACAACGTGGCCCTTGGATGCGGCCACGATAACGAAGGTTTATTCGTCGGAGCCGCTGGTTTACTGGGTCTCG
GCCGGGGTAGACTATCATTTCCGACTCAAGCTGGTCGGAGATTCGGCAGAAAATTCTCCTACTGCCTTGTCGACCGGTCCGCTTCCTCTA
AACCATCCTATCTAGTCTTCGGCGAATCTGCAGTTTCTCGAACCGCTGTGTTTACCCCACTCGTCAAAAACCCAAAACTAGACACGTTTT
ACTACGTGGAGCTCACCGGATTCAGCGTCGGCGGCGCTAGGGTTCCTGCAATCAGGCCGTCGCTGTTCAAGCTAGACGCCGCTGGTGATG
GTGGTGTGATAGTAGATTCAGGAACTTCAGTGACCCGATTGACCCGACCCGCTTACGTAGCTCTGAGGGACGCTTTCCGAATGGGTGCTA
AAGATCTGAAAAGAGCACCCGATTTCTCATTGTTCGATACATGTTTCGATCTATCAGGGAAAACGGAAGTGAAGGTTCCGACAGTGGTTA
TGCATTTCCGTGGAGCTGACGTGTCATTGCCGGCGTCAAATTACTTGATTCCGGTGGACAGTGATGGGACATTCTGCTTTGCATTTGCCG
GTACAATGAGTGGATTGTCGATTATCGGAAACATTCAGCAGCAAGGTTTCAGGGTAGTGTTCGATCTTGCTGGGAATCGCCTAGGCTTTG
CTCCTCGTGGGTGCGCTTAAATTAACGAGAGATTATTATAAAATTGCTTCCAAATTCCCCAGTTTATTATATGTTTGATGATTTTTCTTT
GGTTTGGGGTGTATTAGGAGAAGATAAAGGAACATGATTAGATGTTGTGTGTTTGTATTATGTGTTGTAATACAGGGTTAAGAGTATGTA
GTGATAATTAGTGTAGATTTGTAACTCAAAACACTCTGTTTTCTGTAAGATGGGGCGAGGTTGATAGTAGCTGCAAAATGTGCGGCGCTG
CTTAAACTTGCTATTGATTTATATATTTTTCTTTTTATGTTTTCAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (43)

Alignment image suppressed for unigene with 43 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101417	Peptidase aspartic catalytic	227
2	118448	Peptidase aspartic catalytic Peptidase A1 pepsin - Molecular Function: pepsin A activity (GO:0004194) - Biological Process: proteolysis (GO:0006508)	130
5	129036	Peptidase aspartic catalytic Peptidase A1 pepsin - Molecular Function: pepsin A activity (GO:0004194) - Biological Process: proteolysis (GO:0006508)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U213663	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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