Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U564113 and SGN-U595233 in the current build, Tomato 200607 #2

Unigene SGN-U313718

Unigene Basic Information

Unigene ID:	SGN-U313718
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313718
mRNA sequence:	Length: 1264 bp

>SGN-U313718 Tomato 200607 #1 (69 members)
TAAACCCTAGTTAAGCGGCAATTTTTTCTATATAAACCCTCTAAAACCCTCATTGGTACCGCCCTCTTCAATCTTTGCACTTCGAATAGC
AGTCTTTTTTGCTCTCTTACTTCGCCCCCAGTTTTTCAGCTTTTCAAACAATCATCAATGGAGTTTTGGGGTGTTGAAGTGAAAGCAGGA
CAAACACTAAAGGTTAAGCCCGAGCTTTTCAAGCTCATTCATATTTCTCAGGCTGCCATAGGTGAAGTGAAGGATGTCAAAGAAGCCAAA
TATGTTCCACTACGCCTAACTGTTGGAGATAACAAATATGTCATTGGAACTCTATCTGCTGAGGATAGACCTCAGTTGATGTTTGACTTG
GTCTTTGAAAAGGAGTTTGAACTTTCACATGGATGGAAAAATGGGAGTGTGCACTTCATGGGATACTCTGCTGATGATCCGAGCAGTGAG
GAAATTGACTCTGGAGATGATGTTTTTTCCGATGAAGAGAATGTTATGGAGGCACTGAATGGGAAACTTGAGGCTGATGTGAAGGATGTA
AAGCCTGATGCAAAGAAGTCTGCACCTGCGAAGGATGAGAAAAATGCTAAGGTAGCTGAATCAAAGAAAGAGACGGAATCTGATGAAGAT
GATGACGATTCTGAAGATGACTCTGATGATGAAGACGATTCTGAAGATGACTCTGATGATGTGCCTCTAGGCATGGATGGACCAGAAGGG
ATGGATCTTTCTGATGATTCCGAGGATGATGATGATTCCGAGGAAGATGATGATTCAGAAGAAGAGACACCTAAAAAGGTTGAGCAGAAG
AAGAGACCAGCTCCATCTCCTAAAGTAGCTCCTGGCTCCGGCAAAAAAGCTAAACAAGCAACCCCCGACAACAAGTCAGGTGGTAAGAAA
GGTCCAGCCACCCCTTCTGCTAAGCAAAATGGTAAACCTGCATTCAATGGTAACAACAAACCGAAAACTCAGTCCCCAAAATCTGGTGGT
CAGTTCTCCGGCAACAAATCTAACAACAAGAACTTCAGTGGCCAAAAGAACTTCAAGGGCAAGCAAGGAAGGAAGTAGAGTGCTTGGAAG
ATGTTGTTGAAGAGCAAAGAATTTTTATTTTTATTTTTTTAGTTTATAGATGTTTGGTCTCCCTATGGATTTAAGCTATTTTCCTTAGTA
GGTCAATTTTGATGAATGTTTTTGTTACCAGAAAGTTTTGCCCCTATCTATATTCATTACTATTTTGAACACCTTTCTTTATATGAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	8
Solanum lycopersicum	cTSC	seed	2256	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (69)

Alignment image suppressed for unigene with 69 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101382	Armadillo-like helical - Molecular Function: binding (GO:0005488)	408
2	119255	Zinc finger C2H2-type - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: nucleus (GO:0005634) - Molecular Function: zinc ion binding (GO:0008270)	18
5	132966		5

Preceding Unigenes (1)

Unigene	Build
SGN-U213843	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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