Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U575934 and SGN-U586663 in the current build, Tomato 200607 #2

Unigene SGN-U313759

Unigene Basic Information

Unigene ID:	SGN-U313759
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313759
mRNA sequence:	Length: 2577 bp

>SGN-U313759 Tomato 200607 #1 (65 members)
CGGCCGAATTGCTCTTTTAGCTGCCCCTATGCAGCTGAGTTCCGCAGACTAAAACCCTAGCTCCTCCCTCTCCTTCAACCGTCGTCACGC
CGCTCTCTTTTCGTAAACACATAACTTTTAACCCCCTTTTTTAGATCATCCTCCATAATCAGTAACACAATTAGATTATCGGAAAAGGCT
TGGAGAGTGTAGAAGGCTGCTTTTATTGGCTCTTGCCCCAAGTGTAGCTGTTGGTGGATGCGTTCTTATTCATCTTCTATAGTTGAGGGC
TAAGTTTTCTCTATGGCTTCCAGGAGTAGCATCCGTCTTATTTCATACTCGAATGAGATTATAAATGGTGAACCAATCTATATTTCCTCT
AACTGCTATCCTATTAAAGCTCACAAATATGAGCCTGCTGGGCTTGCTTTTCACTCTGCTGCTCTTAGACTAATTGGGCATGTTGAGAAA
GAAGACCCCAAAGATGGCAAAGAAGATGTTCCTAATGACAAGGAACAGACATTTGCCTATTCATCAGAGTCATACAGCTCTAAGGGGAAG
AAGAAGTCTTCTACCGGCGAAAAGGTACAAGATCATTATGCATTATTAGGGTTGAGCAATCTAAGGTATCTTGCTTCTGAGGATCAGATA
AGGAAGAGCTATCGTGATGCTGCATTGAGGCATCATCCTGACAAGCTGGCTTCACTTCTTCTAGCTGAGGAAACTGAAGCTGCAAAACAA
GCCAAGAAGGAGGAAATAGAAAACCACTTCAAAGCTATTCAGGAAGCATATGAGGTTCTTATGGACCCTGTTAGGAGAAGGATTTATGAC
TCCACGGATGAATTTGATGATGAAATCCCAACTGAATGTGCTCCACAAGATTTTTTTAAGGTCTTTGGACCTGCATTTTTAAGGAATGGT
CGTTGGTCCGTCACCCAACCCATCCCTTCATTAGGTGATGAGAATACTCCAATTAAAGAAGTGGATAGCTTTTATAATTTCTGGTACAGC
TTCAAAAGTTGGAGAGAGTTCCCACATGCTGATGAGTTTGATCTTGAACAAGCTGAATCTCGTGATCACAAGAGGTGGATGGAAAGGCAG
AATGCAAAACTTTCAGAGAAAGCCAGAAAGGAAGAAACCGCCAGGGTGCGTACACTTGTTGACAATGCCTATAGAAAAGACCCTAGAATC
TTAGGAAGAAAAGAGGCGGAGAAAGCAGAGAAGCAGAGAAAGAAGGACGCTAAACTACTTGCAAAGAAATTACAGGAGGCAGAAGCAATT
AGGATTGTTGAAGAGGACAAGCGTAAGAAAGAGGAAGAGGAGAAAAGAGCAGCTGAAGTTGCTTTGCAGCAGAAGAAGTTGAAGGAGAAA
GAAAAGAAATTGTTGCGAAAAGAGCGTAGTCGTTTAAGAACCCTTGCTGCTCCTGTTCTGTCTCAGCGTTTGCTTGGGCTAAATGATGAC
GATGTAGAAGGTCTATGCATGTCACTTGACATTGAGCAACTGAGGAACTTATGTGATAAAGCCGATGGACAGGGTGAGATTGTTATTGCT
GAACTTCTTAGGGGGGCACTTGGACATGAACACAACCTGAAATATGAGAATAAAGATGAAAAGATTAAGTCGCAGCAAAATGGTTCTCTG
GACAGTAAAAAACAAGTTCCTCTGATGAGCAGTGAGAAAAAAGAGAAACCTTGGAGCAAAGAAGAAATTGATCTTTTGAGGAAGGGGATG
CTGAAATATCCTAAAGGAACTTCTCGAAGATGGGAAGTTATTTCTGATTATATTGGTACCGCAAGGACAGTTGAAGAGATCCTGAAGGCT
ACAAAAACAGTTCTGCTCCAGAAGCCCGACTCTGCTAAAGCCTTTGACTCCTTCCTTGAGAAAAGAAAGCCTGCACCAACTATTGTTTCT
CCTCTTTCCACGAGGGCAGAAGTAGAGGGAGTAGAAAATAGTAGCAAGCCTGAAAGTGGAAGCGCCAAAGTAGCTGATTCTCAGGAGACC
CCTAGTCAAAACACAAACAGCCAGAACACTGAGGATGCACCTACAGCAAACGGAGTTTCTTCGAGTTCTGATTCAGACGTATGGTCTGCT
GTTCAAGAAAAAGCCTTAGTTCAAGCTCTGAAAACCTTCCCCAAGGAAACCAGCCAGCGGTGGGAACGAGTGGCAACTGCTGTCCCTGGG
AAGACTATGAACCAGTGTAAAAAAAAGTTTGCATTACTCAAAGAGAATTTCAGGAGCAAGAAAAGTGCAGTGTGAGGTTAGTGGTGCTTG
AAACTGCTGAGTCTAGTTTTTTTCTTTTATTTCTATTTTCTATTGTTCAGGCAGCCGCAACAAGCTCACTCTTGTAATGCATTGTGACAA
CACCCCACACCCCAGTCCATTTTCAGTACCATTTTTGTCATTAAGCAGTAGCATTTACATATCTACTATTCAGTACGGCATTGTGAAGTT
ACTATACTTGAATACAGTAATATTTGATGGGAAACACTGATGATATCTAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAANTCC
GGGGGGGGGGGCCGGGCCCCCATTCCCCCTAAGGGGGGGGTAAATAAAATTTCGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (65)

Alignment image suppressed for unigene with 65 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	121152	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072) Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	7
5	131393	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072) Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	7

Preceding Unigenes (1)

Unigene	Build
SGN-U213709	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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