Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U572014 and SGN-U587995 in the current build, Tomato 200607 #2

Unigene SGN-U313800

Unigene Basic Information

Unigene ID:	SGN-U313800
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313800
mRNA sequence:	Length: 1886 bp

>SGN-U313800 Tomato 200607 #1 (59 members)
GGTCTCATATGAAAGTTATTTGTCAAATAGCAGTGTAGTTGGTCACTCATCATCCCTACACCTCTAATATATCTTCAACTACTAACAATT
CAACAAACTTGTGTAAACTTAACCATGGCAGCTCGCAGAATTTCTTCTTTGCTCTCTCGTTCTCTCAACCTTCCTTCTGTTTCTGCTTCT
CTAGGAAGAAGCCATGGTGTGGCAAGGCACATCAACAGGTTTAGTACAGCTGCAGCTGTTGAGGAAATAATCACTCCACCTGTCCAAATT
AATCACACCAAGCTTCTGATCAATGGACAATTTGTTGATTCTGCATCTGGAAAAACATTCCCAACTTTGGATCCAAGAACTGGGGAAGTC
ATTGCAAATGTTGCTGAAGGTGATCTCGAAGATGTTAATCGCGCTGTGGCTGCTGCTCGCAAGGCATTTGATGAGGGACCATGGCCCAAA
ATGAGTGCTTATGAAAGGTCACGGATAATGCTAAAATTTGCTGATTTGGTGGAGAAACACAATGATGAGATTGCAGCTTTAGAAACATGG
GATAATGGCAAGCCATATTTGCAGGCTGCCCAAGCTGAAGTACCTTCTTTTGTGCGATTATTTCGGTATTATGCTGGATGGGCGGATAAA
ATCCATGGTCTAACTGTTCCAGCTGATGGGCCACACCATGTACAAATTTTACATGAACCAATTGGGGTTGCTGGTCAAATAATTCCATGG
AACTTTCCCCTTCTGATGATGGCCTGGAAAGTTGGGCCTGCTTTAGCGTGCGGTAACACTATTGTCCTGAAGACTGCAGAGCAAACTCCA
CTGACTGCTCTTTATGTTGCAAACTTACTCCATGAGGCTGGTCTTCCTCCAGGTGTTTTAAATATTGTTTCTGGTTTTGGACCTACCGCT
GGTGCTGCACTGGCTAGTCATATGGATGTAGACAAGCTTGCTTTCACTGGATCAACGGAAACTGGACAAACAGTTCTTCAACTGGCTGCC
AAAAGCAATCTGAAACCAGTTACCCTTGAACTAGGAGGGAAATCACCTTTCATTATATGTGAGGATGCTGACATTGATCATGCTGTTGAG
CTAGCACATTTTGCACTCTTCTTTAATCAGGGCCAATGTTGTTGTGCTGGTTCTCGTACATATGTACATGAACGAGTATATGATGAATTT
GTAGAGAAGGCAAAGGCACGTGCAATGAGACGTGTAGTTGGCGATCCCTTCAAGAAAGGTGTTGAACAAGGTCCTCAGATCGACTCGGAG
CAATTTCAGAAGATTCTTAGGTACATAAGAGAAGGCCGTGACAGCTCTGCCACCCTTGAATGTGGTGGTGATAGAATTGGCTCCAAAGGC
TACTTTATTCAGCCCACAGTGTTCTCAAATGTCAAGGAGGACATGTCGATAGCACAGGATGAGATTTTTGGTCCAGTGCAATGTGTCTTC
AAATTCAAGGATATTGGCGAAGTAATAAAGAGAGCAAACAACACTCGCTATGGTCTAGCAGCAGGAGTTTTCACAAAGAACATCGACACA
GCAAACACCTTGACCCGAGGATTGAGAGCTGGAACGGTGTGGGTTAACTGCTACGATATATTTGATGCTGGAATTCCTTTTGGAGGGTAC
AAGATGAGTGGCATGGGCAGGGAAAAGGGTATTTACAGCCTTAACAACTACTTACAAGTGAAGGCTGTTGTTACTCCATTGAAGAATCCA
GCTTGGATATAGATTGGGCACCCCTGATTTTAAAATCATAGTACTACTGTTTTTGTAAAATGACATGGTTGTTTACATGACATTGTTGTT
AGCAATCAATAAAGTCTTCATTTGGTTGTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	15
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	14
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (59)

Alignment image suppressed for unigene with 59 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101476	Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	111
2	118481	Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	93
5	129048	NAD-dependent aldehyde dehydrogenase - Molecular Function: oxidoreductase activity (GO:0016491) Aldehyde dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	53

Preceding Unigenes (1)

Unigene	Build
SGN-U213653	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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