Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577609, SGN-U590772, and SGN-U591417 in the current build, Tomato 200607 #2

Unigene SGN-U313852

Unigene Basic Information

Unigene ID:	SGN-U313852
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313852
mRNA sequence:	Length: 1585 bp

>SGN-U313852 Tomato 200607 #1 (39 members)
GTGAAAAGGGTCCCAATAGCAGCATACAAGAGAGAGCAAAAAGCTTTCCCAATCTATGGCTTTTTCCTAAAAATGGTGTGTGAGTAAAGT
AGTGTTATTGCTCTGGCGGTTGCATCAAACAGAAGCGGGGCCCAATTCCTTCGTTGCATCTACCCAGCCTGCGTCTTCTTTGTTGTCCCT
TTTCCGAAATCCGATACCTTTATCAATAACTCTTCAGTCTCTGATTTCCGGATAAACCATGTCCAAAGCTCGAGTATACACCGATATCAA
TGTGCTTCGTCCTAGGGAATATTGGGATTACGAATCGCTAACTGTTCAATGGGGTGATCAGGATGACTATGAGGTTGTTCGAAAAGTTGG
AAGAGGAAAATACAGTGAAGTTTTTGAAGGTATAAATGTTAACAGCAGGGAGAAGTGCATAATCAAGATCCTGAAACCTGTTAAGAAGAA
AAAGATCAAAAGAGAGATAAAGATATTGCAAAATCTCTGTGGTGGACCAAATATTGTCAAACTCCTTGATATCGTCAGAGATCAGCATTC
AAAAACTCCAAGCTTGATTTTTGAGTACGTGAACAGCACAGATTTCAAGGTTTTGTACCCAACGCTAACAGACTATGACATACGGTACTA
CATATATGAGCTTCTCAAGGCACTAGATTATTGCCATTCACAGGGAATAATGCACAGGGATGTCAAACCTCATAACGTTATGATAGACCA
TGAACTGCGGAAGCTTCGCTTGATAGATTGGGGTCTTGCCGAATTTTACCACCCAGGGAAGGAATATAATGTTCGTGTGGCTTCAAGATA
CTTCAAGGGCCCTGAACTTCTAGTTGACTTGCAAGACTATGACTATTCTTTGGACATGTGGAGCCTTGGCTGCATGTTTGCAGGAATGAT
TTTCCGCAAGGAACCTTTCTTTTATGGCCATGATAATCAGGATCAGCTCGTCAAAATTGCAAAGGTACTTGGGACAGATGAGTTGAATGC
GTACTTGCACAAGTATCAACTAGAGCTTGATCCTCAGCTAGAGGCTATGGTTGGGAGACACAGTAGGAAGCCGTGGTCCAAATTTATTAA
TGCAGACAATCAGCATCTAGTGTCACCGGAGGCTATAGATTATCTTGACAAGCTTCTCCGTTACGATCATCAGACTAGACTTACGGCAAA
AGAAGCAATGGCCCATCCATATTTCGGGCAAGTGAGGGCTGCTGAAACTAGCAGAATGAGGACACAGTAGCTTTCTTGTCTTGCTGTTAA
TGGGAAGAAAAAAAACTGTGTAATGTACCTTGTGTATCCATTTAAGTGACATTCGTGAGAACTATGTGGATTTGAACTTGAGCAGACATC
TGAATTCAGGAATTACAGATCTTCATCATTGAACATTTCAAGAGAAATAGTGTTTTTTAGATTTCCTGATCGTGACCTTGATTGCAAATG
GAAGTGACTTGCTGGGCGTCAAAAGTCACCCCACCCCCCCTTCCCCAAAGATACTATCTCCCTAGATGTGAACAAAAGCAGATTTTTGAA
AATTAGTTCACTTTGTATATTAGTGCACTGGATTTTTCTGCATTCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	129820	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Serine/threonine protein kinase active site - Molecular Function: protein serine/threonine kinase activity (GO:0004674) - Biological Process: protein amino acid phosphorylation (GO:0006468)	15

Preceding Unigenes (1)

Unigene	Build
SGN-U213918	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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