Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U567335 in the current build, Tomato 200607 #2

Unigene SGN-U313928

Unigene Basic Information

Unigene ID:	SGN-U313928
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313928
mRNA sequence:	Length: 1662 bp

>SGN-U313928 Tomato 200607 #1 (21 members)
TTCTCTTCTTCTTCTCATCTTCCTCCTTCCTTCCTGCAATTTTTCTCCAATCAATCTCACATTATATATTCTCATAATTTTTTGATGAAT
TTATTAGTGTTTTACTAAATTTCTATCAATAATGGTTGATGCTAATATGGGTGCTGCTCAATTTCCTGATTTTCCTAAAATTGTCACTCA
TGCTGGACAATATGTTCAGTATGACATTTTTGGTAATCTTTTTGAGATTACTAACAAGTATCAACCTCCTATCATGCCTATTGGACGTGG
CGCTTATGGAATCGTCTGCTCTGTGTTTAATGCGGAGCTGAATGAGATGGTTGCAGTTAAGAAAATCGCCAATGCTTTTGATAATTACAT
GGATGCTAAGAGGACGCTCCGTGAAATTAAGCTTCTTCGCCATTTAGACCATGAAAACGTCATTGGTTTAAGAGATGTGATTCCTCCGCC
CTTACGAAGGGAGTTTTCTGATGTTTACATTGCTACTGAACTCATGGATACTGATCTTCACCAAATAATTAGATCAAACCAAGGTTTATC
AGAGGATCATTGCCAGTACTTCATGTATCAGCTTCTCCGTGGGCTAAAGTACATACATTCCGCGCATGTTATTCATAGAGATCTCAAACC
AAGTAACCTCTTGCTAAATGCAAATTGTGATCTTAAGATATGTGATTTTGGTCTTGCAAGGCCAAACGTAGAGAACGAGAATATGACAGA
ATATGTAGTAACCAGATGGTACAGAGCACCGGAGCTTTTGTTGAACTCTTCAGATTACACTGCTGCCATAGATGTTTGGTCTGTGGGTTG
CATCTTCATGGAGCTTATGAATAGAAAACCTTTGTTTGCTGGAAAAGATCATGTACATCAAATTCGCTTGCTAACTGAGCTTCTTGGCAC
TCCTACAGAATCTGATCTTAGCTTCCTCCGTAATGAAGATGCAAAAAGATACGTCAGGCAACTCCCACAACATCCACGCCAGCAGTTAGC
AACAGTGTTCCCTCATGTGAATCCATTAGCCATTGATCTTGTAGATAAGATGTTGACGCTCGACCCTACTAGAAGAATAACAGTTGAGGA
AGCATTAGCTCATCCCTACCTCGCAAAGCTCCATGATGCAACTGATGAACCAGTCTGCCCCATCCCGTTCTCTTTCGACTTTGAGCAACA
AGGGATAGGAGAAGAGCAGATTAAAGACATGATTTATCAAGAAGCTTTGGCGTTGAATCCTGAATATGCTTAAGCATAAGAGAAATCAGT
TCTTCTCTTGCTTACCTAGTGTGGATTTTCTTGCTTGGACCAGCCCTCTCAAAGTTTTTGTTCACAGGGTCAGTAGTAGTCCTTTGCAAC
TTTAATGTAAGGCAGCCTTCAATTTGCAGCCATTTTTATATACCTTTCTTCTTTATTTTTTTTACTTAATTATGGTGGTGTTCGGGCTAG
CTTGTGTTCACTCGACTATTCCATAGGATACATGTCATCTCCCACCAACAAAAACGTTTGTACGTCTTCCACTCATTCATATGACTTGTA
TCTTGTGTTCTGTTTGTAGCTTATTATAGTAACTATTTTTTGTTCAATGTATCATGTTGTATTATGTACAGTATGTACAAAATCTATCAA
GAATCTATTTGTCATTTTGAAAAAAAAAAAAAAAAAAAACTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
mpk3	mitogen-activated protein kinase 3	protein kinase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118420	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	253
5	128957	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	116

Preceding Unigenes (1)

Unigene	Build
SGN-U215877	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer