Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579928 in the current build, Tomato 200607 #2

Unigene SGN-U314233

Unigene Basic Information

Unigene ID:	SGN-U314233
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314233
mRNA sequence:	Length: 3338 bp

>SGN-U314233 Tomato 200607 #1 (37 members)
TTTTGTGTCCTTTTCTTTTTTTTTGCTCTCTTTCTCTCTCATCACTCACATGAAGAAGCTCCTACTTCTATCCATTGAAGATAGATAAAT
GAACACGCATATACATACAGTTTTTAGAGAGAGAAACTAGAGCGAGAAGGCTCTGTAACTTCAATTTTGAGTGTTGATTGCTGTTTCTAG
GGTCTCTTTGGTTACCAGTTTTGCATGCTTTTGAGCTGAGGAAGAGTTTAGTGCTTTTTTTCTGGTGAATTTTGGAGAAGGAAGTTTTAT
TTTGTGCTTGTTTTATGAATTGATTAGTGTGGATATGAGAGATCTGTGTTGAGAATTAGTGTACGGAAATGGCTGCTTCGGAGGTGTCGA
TTCAAGGTTACAGCGAGCCGAGTGATGGTTCTAGGCCGGTTTCAGAGACTGGTAGGAGTAGTTCCGGTGTCGGAATAGTTGATGCTGATA
CGGCGTTGTACACGGAGCTTTGGCGTTCATGTGCCGGTCCACTTGTGACGGTACCGCGAGAGGGTGAGCTGGTGTACTATTTCCCTCAAG
GACATATCGAGCAGGTTGAAGCATCAACTAATCAAGTGGCTGACCAGCAGATGCCTTTGTATAATCTTCCATCTAAGATTCTATGCCGTG
TTGTGAATGTCCTGTTAAAGGCTGAACCAGATACTGATGAGGTGTATGCACAAGTGACTTTGATGCCGGAGCCAAATCAAGATGAGAATG
CAGTGAAGAAGGAACCTATGCGCCCTCCTCCACCACGATTTCATGTACACTCTTTTTGTAAGACTCTAACAGCCTCTGATACAAGCACTC
ACGGTGGATTTTCTGTCTTGAGACGACATGCTGATGAATGCCTCCCCCAACTGGACATGTCTCGGCAGCCTCCCACACAGGAGTTGGTGG
CCAAAGATTTACATGGAAACGAGTGGCGATTCAGGCATATATTCCGGGGCCAGCCTAGGAGGCATCTTCTTCAGAGTGGTTGGAGTGTCT
TTGTTAGTTCGAAGAGGCTTGTTGCTGGGGATGCATTCATATTTCTTAGAGGTGAGAATGGGGAGCTTCGTGTTGGTGTTAGACGTGCCA
TGAGACAGCAAGGAAATGCTCCATCATCGGTGATATCCAGTCATAGCATGCATCTTGGTGTACTTGCAACAGCTTGGCATGCCATTCAAA
CAAAAACGATGTTCACTGTGTATTACAAGCCCAGGACAAGCCCTGCTGAGTTTATAGTTCCATATGACCACTATATGGAATCTGTGAAGA
ATAATTACTCTATTGGAATGAGGTTTAAGATGAGGTTCGAAGGTGAAGAAGCTCCAGAGCAAAGGTTTACTGGAACTATTGTTGGTATTG
AAGATGCTGATCCCCAAAGGTGGCTTGAATCTAAGTGGAGATGTCTGAAGGTACGGTGGGATGAAAATTCAAGCATTCCAAGGCCAGACC
GAGTTTCACCGTGGAAAATAGAACCAGCTCTTAGCCCTCCTGCACTTAATGTACCTCCAGTTGCAAGGCCAAAAAGGCCTAGATCCAGTA
TTTTGCCCACATCTCCTGATTCATCTGTCCTTACTAGGGAAGGTTCATCAAGAGCGACAGCAGACCATTCCCAAGCCAGTGGGTTTCCGA
GGGTCTTGCAAGGTCAAGAGTTATCGACCTTTAGAGGCGGTTTTGCAGAAATTAATGAGACAGACTTGTCTGAGAAACCAATGATATGGC
AAACATCAGTGAATGATGAAAAGAATGATATTCATTCTGCATCAAAGAGATATCTTCCAGATAAATGGCTACCTTTAGGGAGGCCTGAGT
CATCTCTCACAGATTTGTTATCAGGTTTTGGCTCCTCCCATGGGTTCTGTTTACCCTCTGCGGACCAAGCTGCGTTTGGTGCTAGATTGG
TGAAGCAACAAACACAAGATCAGGAAAAGGATTTTAGCTTATTGGGAAAGCCATGGTCTCTTCTGTCTTCCGGTCTCTCTCTTAATCTGA
TGGATTCTGGTTCAAAAGCTCCTGGCATAGGGGGTGATACTCCCTATCAAATGCGGGGAGATGCTAGGTATAGTGGTTATGGTGAGTTTT
CAGTACTCCCCGGTCATAGGGTTGCAAATCAGCAGGGAAGCTGGATTATGCCTCAACCAGTGTCGCCTTACATGCAGCTCTCCTCTCATT
CAAGAGAAATGATGCATAAACCCTCTGTAGTAAAGCAACCCGAGGCTGTGAAACCCAAAGAGGGTAACTACAAACTATTTGGCATTCCTC
TTACAAGTAATGTTTGCACAGATGCTGTTATGATGCGGAAAAGTTCATTGATTGATCCAGCAAGTGACATGAATATTGGTATACACCCTC
ATCAATCCCTTGCCACTGATTCTGATCAAAGGTCTGAGCAATCAAAGGGATCAAAGGTGGATGATGGAGTTGCAGCTAATGATCATGACA
AACAATTTCATACCTTTCATCTTGCTGCTAGAGACAAGGATGGCAAAGGGCATAGTAGTTCTACAAGGAGCTGCACAAAGGTTCATAAAC
AGGGTACAGCACTCGGAAGGTCCGTAGATCTTGCAAAGTTCAACAATTATGACGAATTGATTGCTGAACTGGATCAACTTTTTGATTTTA
ATGGTGAACTCAAGGCTCGGAGTAAGAGTTGGCTGGTTGTATACACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGC
AGGAATTTTGTGGTATGGTTCGCAAGATTTTCATCTATACAAAAGAGGAGGTGCAGCGTATGAATCCAGGGACCCTTAATTCAAAAGGTG
AGGACACTTCTTCTGTTGCTGAGGGCTCAGACGCTAAAGAAGTGAAGAATCTGCAACTTCCTTCTGAATCTGGTCAAGCAGAATCTTAGG
TTTTCCTCCAAAATTGAGGTTTATAAGATAGCGAGGAGATGGCTTTTATCCACCTAGGTGTTACTTTTTTGGGGATTTTTGAATATAACC
TACAATATCAACTCCCTTTGACGTGTGGATGGGGATGGTCTCTTCATATAAATGCAGCTTCAGTATTTGCAGTTTTGAGCCTTTATTTGG
AGCCAATATCTGGCCCCTTATCTATCTATATACATAGTATATGTAAATTATCAGCGTTGGTCATTAACGTTGCTTCTGCCAATCTCACTT
TTGTACATACCAATTTCTCTAGCTGTAGCTGTAATTAAGATTTCGATTCTACTATGTATGTACCTGCCTTACTGTTGATTTTTGTGGAAG
TGGTATCCAACTACTTTGGGCAGATAACATATTTTGTATCAGCAATTATGGTAATGTGATAGAAAAGAAGGTTTTTCTGAAAAAAAAAAA
AAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
arf2	auxin response factor 2A	Auxin Response Factor

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P117044 (915 Aa)

MAASEVSIQGYSEPSDGSRPVSETGRSSSGVGIVDADTALYTELWRSCAGPLVTVPREGELVYYFPQGHIEQVEASTNQVADQQMPLYNL
PSKILCRVVNVLLKAEPDTDEVYAQVTLMPEPNQDENAVKKEPMRPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDMSRQ
PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNAPSSVISSHSMHLGVLA
TAWHAIQTKTMFTVYYKPRTSPAEFIVPYDHYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWLESKWRCLKVRWDEN
SSIPRPDRVSPWKIEPALSPPALNVPPVARPKRPRSSILPTSPDSSVLTREGSSRXDSRPFPSQWVSEGLARSRVIAFRGGFAEINETDL
SEKPMIWQTSVNDEKNDIHSASKRYLPDKWLPLGRPESSLTDLLSGFGSSHGFCLPSADQAAFGARLVKQQTQDQEKDFSLLGKPWSLLS
SGLSLNLMDSGSKAPGIGGDTPYQMRGDARYSGYGEFSVLPGHRVANQQGSWIMPQPVSPYMQLSSHSREMMHKPSVVKQPEAVKPKEGN
YKLFGIPLTSNVCTDAVMMRKSSLIDPASDMNIGIHPHQSLATDSDQRSEQSKGSKVDDGVAANDHDKQFHTFHLAARDKDGKGHSSSTR
SCTKVHKQGTALGRSVDLAKFNNYDELIAELDQLFDFNGELKARSKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVQRMNP
GTLNSKGEDTSSVAEGSDAKEVKNLQLPSESGQAEFRFSSKIEVYKIAEEMAFIHLGVTFLGIFEYNLQYQLPLTCGWGWSLHINAASVF
AVLSLYLEPISGPLS

SignalP predicts non-secretion with a score of 0.022

IPR010525 Auxin response factor
IPR001093 IMP dehydrogenase/GMP reductase
IPR003311 AUX/IAA protein
IPR003340 Transcriptional factor B3

Prediction based on longest six frame method

>SGN-P243420 (849 Aa)

CTEMAASEVSIQGYSEPSDGSRPVSETGRSSSGVGIVDADTALYTELWRSCAGPLVTVPREGELVYYFPQGHIEQVEASTNQVADQQMPL
YNLPSKILCRVVNVLLKAEPDTDEVYAQVTLMPEPNQDENAVKKEPMRPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDM
SRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNAPSSVISSHSMHLG
VLATAWHAIQTKTMFTVYYKPRTSPAEFIVPYDHYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWLESKWRCLKVRW
DENSSIPRPDRVSPWKIEPALSPPALNVPPVARPKRPRSSILPTSPDSSVLTREGSSRATADHSQASGFPRVLQGQELSTFRGGFAEINE
TDLSEKPMIWQTSVNDEKNDIHSASKRYLPDKWLPLGRPESSLTDLLSGFGSSHGFCLPSADQAAFGARLVKQQTQDQEKDFSLLGKPWS
LLSSGLSLNLMDSGSKAPGIGGDTPYQMRGDARYSGYGEFSVLPGHRVANQQGSWIMPQPVSPYMQLSSHSREMMHKPSVVKQPEAVKPK
EGNYKLFGIPLTSNVCTDAVMMRKSSLIDPASDMNIGIHPHQSLATDSDQRSEQSKGSKVDDGVAANDHDKQFHTFHLAARDKDGKGHSS
STRSCTKVHKQGTALGRSVDLAKFNNYDELIAELDQLFDFNGELKARSKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVQR
MNPGTLNSKGEDTSSVAEGSDAKEVKNLQLPSESGQAES

SignalP predicts non-secretion with a score of 0.029

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101391	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983)	341
2	118485	Transcriptional factor B3 - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	89
5	129081	Transcriptional factor B3 - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	45

Preceding Unigenes (3)

Unigene	Build
SGN-U216849	Lycopersicon Combined #3
SGN-U222937	Lycopersicon Combined #3
SGN-U227824	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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