Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578689 and SGN-U581552 in the current build, Tomato 200607 #2

Unigene SGN-U314248

Unigene Basic Information

Unigene ID:	SGN-U314248
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314248
mRNA sequence:	Length: 2517 bp

>SGN-U314248 Tomato 200607 #1 (61 members)
ATGAAGAAGTACGAGACACTCTCATACCTTCCTGATTTGTCTGACGAGCAATTGCTTANTGAAATTGAGTACCTTTTGAAAAATGGATGG
GTTCCTTGCTTGGAATTTGAGACTGAGCACGGATTTGTCTACCGTGAGAACAACAAGTCACCAGGATACTATGATGGAAGGTACTGGACC
ATGTGGAAGTTGCCTATGTTTGGGTGCACTGATGCAACCCAAGTGTTGGCTGAGGTTCAAGAGGCTAAAAAGGCATACCCACAAGCATGG
GTCAGAATCATTGGATTCGACAATGTGCGTCAAGTGCAGTGTATCAGTTTCATTGCCTACAAGCCAGAAGGCTACTAAGTTTCATATTAG
GAACAAAATTGTCTTTAGGGACACTTTGTTTTTAAATGCTACTTAGGTCTTTTTTCTTTTTTGTCTTAATTCCAACAAACTCTTTGTGTC
TTGTACTATTCGGTTTATGTTTTGGATTTATGAGTACCTAATTATATGATAATGATTTGGTGCTTTGTTTGTAAAAAAAAAAAAAAAAAA
AAAACTCTTCCCCTTTCTCTCTCTAAAAAAATTGTTATTTTATAGTGAGAGAAAAAGAGGATTCAAGAATCATCAAAAGGCAAAAAAAAT
AATCATGGCTTTATCAAACACCTTATCATTGTCATCATCAAAATCCCTTGTTCAATCTCATCTGCTCCATAATCCTACACCCCAACCTCG
TTTTTCCCTTTTTCCGACCACCCAACATGGGCGGCGCCACCCTATCTCCGCCGTACACGCGGCGGAGCCATCCAAGACTGCAGTTAAGCA
AGGAAAATGGAGTCTTGATAGCTGGAAAACAAAGAAAGCTTTACAACTTCCTGAATACCCAGATGAGAAAGAACTTGAATCGGTGCTTAA
AACACTTGAAATGAATCCACCCCTTGTGTTTGCTGGTGAGGCAAGGAGTTTGGAAGAGAAGCTTGGTGAGGCTGCATTGGGGAAAGCTTT
TTTGTTACAAGGGGGAGACTGTGCTGAGAGTTTTAAGGAGTTTAATGCCAATAATATTCGTGATACTTTCAGGATTTTGCTTCAGATGAG
TGTTGTTCTTATGTTTGGTGGACAAGTTCCTGTCATTAAGGTTGGAAGAATGGCCGGTCAGTTTGCAAAACCAAGATCAGATCCGTTTGA
GGAGATAAATGGAGTGAAGCTACCAAGTTACAAGGGTGACAATATCAATGGTGATACGTTCGATGAGAAGTCAAGAATTCCAGATCCTCA
TAGGCTTATTAGGGCATACATGCAATCTGCTGCGACTCTTAATCTTCTTAGAGCTTTTGCTACTGGAGGTTATGCTGCAATGCAGAGGGT
CACTGAATGGAATCTTGATTTTGTGGAGAACAGTGAACAGGGAGATAGGTATCAGGAACTAGCTCACAGGGTTGATGAAGCCTTAGGATT
CATGGCTGCTGCTGGACTCACAGTTGACCACCCTATCATGTCAACAACTGATTTCTGGACATCCCATGAGTGCTTGCTTCTTCCTTATGA
ACAAGCACTTACAAGAGAGGATTCAACTTCTGGTCTTTTCTACGATTGTTCTGCTCACATGGTTTGGGTTGGGGAAAGAACCAGGCAACT
AGACGGTGCTCATGTCGAGTTTTTGAGAGGAGTTGCGAACCCTCTTGGAATAAAGGTGAGTCAAAAAATGGATCCAAAAGAGCTAATTAA
GCTCATTGACATCCTGAACCCTGCCAATAAGCCTGGAAGAATTACTGTAATTGTTAGAATGGGTGCCGAGAACATGAGAGTAAAACTTTC
CCACTTGGTCAGGGCTGTACGGGGCGCTGGTCAGATTGTGACATGGGTTTGTGATCCAATGCACGGGAATACCATCAAGGCACCATGTGG
ACTCAAAACCCGTGCTTTCGATTCAATCCTGGCTGAGGTCCGAGCTTTCTTCGATGTGCATGAGCAAGAAGGAAGCCACCCTGGTGGTAT
TCACCTTGAAATGACAGGGCAAAATGTGACTGAATGCATTGGTGGATCACGAACAGTAACCTATGACGATTTGGGCTCTCGCTACCACAC
TCATTGTGACCCAAGATTGAATGCATCTCAGTCTCTTGAACTCTCCTTCATCGTAGCTGAGCGACTAAGAAGAAGAAGAATGTCATCTCA
ACGTCTGTAGGCTTATCTAATTTACCTGTACTTCTCTAGTATGAAGTCTTGTTTGCTTGGTATCCCAATAACTTATATATGTAGCCTCTG
GCCATCCACTGCTAAACACGTTTTAATAAACATGCCTGAGCAAGTTGCCTGATGAGGTAAATAGGTTTTCTGCAGTGATCAAAGGGGAAA
TGAACATCAAGTAAAATTAGTCGATTTATCCGGCATCTGTTCTGTTTATTTTAGTTTGGACTGTAAGTCTAGGTTTTAAGGGTGTTCAGT
TTTTCTTTGGGATACTGGTTTTGCTGTTTTAGTCTAATGTGTTTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
ss5	Tomato RuBP carboxylase small subunit
Z21792	DAHP synthase 1 precursor

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (61)

Alignment image suppressed for unigene with 61 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118869	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27
5	129282	DAHP synthetase class II - Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Calycin-like	27

Preceding Unigenes (1)

Unigene	Build
SGN-U225512	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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