Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580213, SGN-U590886, and SGN-U591319 in the current build, Tomato 200607 #2

Unigene SGN-U314312

Unigene Basic Information

Unigene ID:	SGN-U314312
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314312
mRNA sequence:	Length: 1497 bp

>SGN-U314312 Tomato 200607 #1 (289 members)
GGGCGATTGGCGGCCAATCGGCCGAATTGGCTACATTGACTGTGGTTTACACCATAACCTAATTTCTCTCTCTTACATCTTTGCTTAAGC
TTTCATACTCTTTTTTTTTCTTAGCAATGGCAAACGGAAAGATCAAAATCGGAATCAACGGATTCGGTAGAATTGGTCGTTTGGTGGCTA
GAGTTGCTCTACAGAGAGATGATGTTGAACTAGTTGCAGTGAATGATCCATTTATTTCCACTGATTACATGACATATATGTTTAAGTATG
ATTCAGTACATGGACAATGGAAGCATCATGAGCTAAAGGTCAAGGATGAGAAGACACTTCTCTTTGGAGAGAAGGCTGTTACAGTTTTTG
GAATCAGGAACCCTGAAGATATCCCATGGGGTGAAGCTGGTGCTGACTTCGTTGTTGAATCAACCGGTGTCTTCACTGACAAGGACAAGG
CTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTGTGATCTCTGCTCCTAGCAAAGATGCTCCCATGTTTGTTGTGGGTGTCAACGAGA
ATGAATACAAGCCAGAGCTGGACATTGTCTCCAATGCTAGTTGCACAACGAACTGCCTTGCACCTTTGGCTAAGGTTATCAATGATAGGT
TTGGCATTGTTGAGGGTCTCATGACCACTGTCCACGCCATGACTGCCACCCAGAAAACTGTTGATGGTCCATCCATGAAGGACTGGAGAG
GTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGCACTGGTGCAGCCAAGGCTGTTGGAAAAGTGCTCCCACAACTTAACGGCAAAT
TGACTGGAATGGCCTTCAGAGTACCAACTGCTGATGTCTCCGTTGTCGATCTTACTGTAAGACTCGAGAAAGAAGCCTCCTATGAAGACA
TTAAGGCTGCAATCAAGGAGGAATCAGAGGGTAAATTGAAGGGTATCTTGGGATACACTGAAGATGATGTGGTTTCCACAGACTTTGTTG
GTGACAGCAGGTCAAGCATTTTTGATGCCAAGGCTGGAATTGCTTTGAGCAAGAATTTTGTGAAAGTTGTGTCATGGTATGACAACGAAT
GGGGTTACAGTTCCCGTGTGATTGATTTGATCTGCCATATGGCTAAGGCTTGATTGATGCTGCTGGGGAGCAAAAGACAGCAATGTGTTT
TAGTTTTTGCTTGGAAGTACTATTAGTTTTGTGGGCCTGGAGTGGTCTTTCTTGTTTATGTGTAATTGAATAACCAGAGAAGAACGGAAC
CCTGTTGTTATCTTTGAGGAAATCTTTTTTATTGTTTGACTTTGTCATGAATGAAACAATCAAACTTTACTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCCCCAAGGGGGGGGTTTTTTTTTTTTTTTG
GGCCCCCCAAAAAGGGGGGGGAAAAACGGGGAAAAATTTTTTTCGGGGGAAAATTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gapdh	glyceraldehyde 3-phosphate dehydrogenase	phosphate dehydrogenase

Genomic locations (0)

None

Library representation (36)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	37
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	13
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	25
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	23
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	8
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	8
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	8
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	17
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	6
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	9
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	11
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	11
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	17
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	9
Solanum lycopersicum	cTOS	suspension cultures	8026	17
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (289)

Alignment image suppressed for unigene with 289 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101545	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	78
2	118512	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	71
5	129136	Glyceraldehyde 3-phosphate dehydrogenase - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity (GO:0004365) - Biological Process: glycolysis (GO:0006096) - Molecular Function: NAD binding (GO:0051287) Glyceraldehyde-3-phosphate dehydrogenase type I - Biological Process: glucose metabolism (GO:0006006) - Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943) - Molecular Function: NAD binding (GO:0051287)	37

Preceding Unigenes (1)

Unigene	Build
SGN-U212862	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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