Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577417, SGN-U577424, SGN-U577612, SGN-U579271, SGN-U579650, SGN-U579831, and SGN-U581206 in the current build, Tomato 200607 #2

Unigene SGN-U314329

Unigene Basic Information

Unigene ID:	SGN-U314329
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314329
mRNA sequence:	Length: 3877 bp

>SGN-U314329 Tomato 200607 #1 (162 members)
TTTTGCTCAAATATCTGTATACTCTCTCCGCCATTTTCACAAAATTCTTCATTTCTTAAAAACCCTAACTTACCTTTTGGCTACGGATGA
CGACGTCGTTTGGAGCAGCGATCAATATCGCCGCCGTCGATGACCCCAACCCGAAGCTACAAATTCAGAGGTTCAATGGATTGAAAAGCA
CCTCTAATTCGATTTTGCTTAGCAGACGTATCCATCGCTCATTTTCTCATTCCAATTCTACTTCTATTGTCCGTGCTGTATCTACGCCAG
CGAAGCCAGCTGCGGTGGAGCCCAAGCGTAGTAAGGTTGAAATCTTCAAAGAACAGAGTAACTTCATAAGATATCCTCTAAATGAGGAGA
TTCTTAATGATGCCCCAAACATCAATGAGGCTGCAACACAATTGATTAAGTTTCATGGAAGCTATATGCAATACAACAGAGACGAGCGTG
GATCAAGATCATACTCATTTATGCTTCGGACAAAGAACCCTGGTGGTGAAGTACCGAACAAACTCTACTTAGTCATGGATGATCTTGCTG
ACCAATTTGGGATTGGGACACTCCGTTTGACAACAAGACAGACCTTTCAGCTGCATGGGGTCTTGAAGAAAGACCTAAAGACAGTAATGA
GTACAATCATCCACAACATGGGTTCAACTCTTGGTGCATGTGGTGACCTCAACAGGAACGTTCTGGCTCCAGCTGCCCCATTTGCAAAAA
AAGATTATGTTTTTGCTAAACAAACAGCTGACAACATTGCAGCACTTTTAACTCCCCAGTCTGGATTTTACTATGACGTTTGGGTGGATG
GGGAGAAATTTATGTCAGTAGAACCTCCTGAAGTTGTGAAAGCTCGGAATGATAACTCCCATGGAACGAACTTTCCTGACTCACCTGAAC
CCATTTATGGAACTCAGTTCTTGCCAAGAAAGTTCAAAATCGCAGTTACTGTGCCAAGTGATAACTCGGTGGACATTTTCACGAATGACA
TAGGTGTTGTTGTTGTATCTGATGAGGATGGAGAACCTCAGGGATTCAATATATATGTAGGTGGTGGTATGGGACGAACTCATAGGATGG
AAACTACTTTTCCTCGTCTGGCTGAGCCATTAGGTTATGTTCCTAAAGCGGATATACTTTATGCAGTTAAAGCTATTGTTGTTACTCAGA
GAGAGAATGGGAGAAGAGATGATCGCAGATATAGCAGATTGAAATATTTACTCAGTTCATGGGGGATTGAGAAGTTCCGATCTGTCACTG
AACAATATTACGGAAAGAAGTTTGAACCCTGCCGTGAATTGCCTCAATGGGAATTTAAAAGTTACTTGGGATGGCATGAACAGGGAGACG
GTAGTTTGTTTTGTGGTCTACATGTTGACAATGGTCGTGTAAAAGGAGAGATGAAGAAGGCACTCAGGGAAGTTATTGAGAAGTATAATC
TGAATGTGCGTCTCACACCCAACCAAAATATTATCTTGAGCAATATTCGGCAATCTTGGAAGCGCTCCATCACCACAGTCCTTGCACAGG
GTGGTTTGCTGCAACCTAGGTTTGTCGATCCTCTCAATCTAACAGCAATGGCGTGCCCAGCTTTTCCACTTTGTCCTCTAGCAATCACTG
AAGCTGAGCGTGGAATACCTGACATCCTCAAGCGTGTTAGAGCTATGTTTGACAAGGTTGGTCTGAGGTTCTATGAATCCGTTGTTATAA
GGGTAACAGGTTGTCCCAATGGATGTGCTCGACCATACATGGCTGAACTTGGATTGGTTGGAGATGGTCCAAACAGCTATCAGATCTGGC
TCGGTGGAACTCCCAATCAAACTGTATTGGCAAGAACTTTCAAGGATAAGGTTAAGGTTCAGGATCTTGAAAAAGTTCTGGAGCCTTTAT
TTTTCCATTGGAAAAGAAAGCGACAATCTAAAGAATCGTTTGGGGAGTTCTCAAACCGCTTGGGATTTGAGAAACTAGGGGACTTGGTTG
AGAAATGGGATGGCATCCCTGAGTCATCATCTCGTTATAACTTAAAGCTATTTGCTGATAAAGAGACGTATCAAGCCATGGATGCACTTG
CAAGAATACAAAATAAGAATGCCCATCAATTGGCGATTGATGTAATTCGCAATTATGTTGCTTCCCAGCAAAATGGGAAAAGCATGGACT
GACCAAGTCATCTTTTGTGTTGCAAAACAGTAAAGATAATGGCAAGGAGATTTAACTGGTGACTACGTCTTCGTCTTGAAATTGCTTGGC
TGAAACAAGTGGAGAATTTTGACATAATGTTGTGCAAGCTTTTATAGTACTTCACTCGTAGAGCTGACAGTACACTGCATTTTTCCTTTC
TATTTTTCGTTGTTCATTTCCCAGTTCCTTTTCATGAGCAAACAAAATCTGATAATGGCCTGTATCTTATTTTCTTTCAAATTAGTTTTT
GAAAGGGTGCCGAATTCGGCACGAAGAAAACAAAGAATGGGTTCCAAAGCATTTCTGGTTTTTGGTCTTTTTTTGGCTATTTTCCTAATG
ATAAGCTCTGAGATTTTAGCTACTGAGTTGGCTGAGACTTCTAAGAAATCTGATAACAAGAATGAAGTACATGAAGCCCAATATGGTGGA
TATGGACGCGGTGGTGGTGGATATGGACGCGGTGGTGGTGGAGGATATGGACGTGGTGGTGGATACGGACATGGTGGTGGTGGTGGATAT
GGACATGGTGGTGGTGGATATGGATACGGTGGTGGATACGGACACCGTGGTGGCGGTGGTGGTGGACGACGTGGTGGATACTGCCAGTAT
GGTTGCTGTGGCCATGGTGACAATGGTTGCTATAGGTGTTGCTCCTATAAAGGTGAGGCAATGGACAAAGTTACTCAAGCTAAGCCACAC
AATTAATTAATTATGTGTGGAGTACGTAGTATATTATATTAAAACTTTTGTAATGGCAATTATGTAATATTATTAGCAATGCTCTTTCTA
CTTTAGAGCTTGCTATAATATTAGTAAAAATGTATTGAATAAAAGCCATGTTGTAGTAATTTTATTATCAATATTTTATTATGATATTCA
TATTTAAAAAAAAAAAATAATACCAAAAAGTTCTAGTTCTTTTTAAAAAAAAAAAAAATAATTTCTGAGATAGAAATTAAGTGTGATGGA
GATATTTTTTATGAAGTATATAGGCACAGGCCACACCATATCTCCACCATGTCCCCTAATAACATACAAAATGTGGATGTTCATGAAGGT
GAATGGGGCACAATTGACTCTGTTATCTTTTGGAACTTCATCCATGATGGGAAAGAAGTGCTGGCAAGGGAGAAAGTGGAAGAAATAGAT
GAAGAAAAGAAGCTAATTAAAAAAAAGATAATTGAAGGAGATATATTGGAGTATTACAAATCATTTTACATCACTGTTCATGTTGAGACA
AAGGGCGAAAATAATTTAGTTACTTTGACCATAGAATATGAAAAGAAAAATGCTAATGTGCCAGATCCACACACATTCATGGAATTACTC
CTCAATGTAACCAAAGATATTGAGAATTACCACATCAAGTGATACATAAATATTATACACAAGGACTCTTTGAAAATATCGACAAGTATA
TGTCGAATTTTTTAAAATACTGTATTTTGAAGAAATCGATATAAATATGATAATATTTTTGAATAGTTGAAATAATGTATACCAAATGCT
TGGATTTAAGCTGTTTCAAAGTCTTGTAATAATATGTGTTGTTATTAGCGGGTGTGCTTTGAAATATCTTGTAACAAAAATAAAACGAGC
GAATATCTAATTTTTATAGATAACTAAAAAAAAAAAGTTGTTATTTTAAAGGCACTATAGTTTTTCTTTCTTTTTTAAAAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	116

mRNA member sequences (162)

Alignment image suppressed for unigene with 162 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P117139 (933 Aa)

MTTSFGAAINIAAVDDPNPKLQIQRFNGLKSTSNSILLSRRIHRSFSHSNSTSIVRAVSTPAKPAAVEPKRSKVEIFKEQSNFIRYPLNE
EILNDAPNINEAATQLIKFHGSYMQYNRDERGSRSYSFMLRTKNPGGEVPNKLYLVMDDLAXPIWDWDTPFDNKTDLSAAWGLEERPKDS
NEYNIHNMGSTLGACGDLNRNVLAPAAPFAKKDYVFAKQTADNIAALLTPQSGFYYDVWVDGEKFMSVEPPEVVKARNDNSHGTNFPDSP
EPIYGTQFLPRKFKIAVTVPSDNSVDIFTNDIGVVVVSDEDGEPQGFNIYVGGGMGRTHRMETTFPRLAEPLGYVPKADILYAVKAIVVT
QRENGRRDDRRYSRLKYLLSSWGIEKFRSVTEQYYGKKFEPCRELPQWEFKSYLGWHEQGDGSLFCGLHVDNGRVKGEMKKALREVIEKY
NLNVRLTPNQNIILSNIRQSWKRSITTVLAQGGLLQPRFVDPLNLTAMACPAFPLCPLAITEAERGIPDILKRVRAMFDKVGLRFYESVV
IRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTPNQTVLARTFKDKVKVQDLEKVLEPLFFHWKRKRQSKESFGEFSNRLGFEKLGDL
VEKWDGIPESSSRYNLKLFADKETYQAMDALARIQNKNAHQLAIDVIRNYVASPAKWEKHGLTKSSFVLQNSKDNGQGDLTGDYXLRLEI
AWLKQVENFDXNVVQAFKYFTRRADSTLHFSFLFFVVHFPVPFHEQTKSDNGLYLIFFQIVFXKGAEFGTKKTKNGFQSISGFWSFFGYF
PNDKLEILATELAETSKKSDNKNEVHEAQYGGYGRRWWWIWTGGGGGYGRGGGYGHGGGGGYGHGGGGYGYGGGYGHRGGGGGGRRGGTA
SMVAVAMVTMVAIGVAPXKGEAMDKVTQAKPHN

SignalP predicts non-secretion with a score of 0.306

IPR005117 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like
IPR006067 Nitrite and sulphite reductase 4Fe-4S region
IPR001093 IMP dehydrogenase/GMP reductase
IPR010800 Glycine rich
IPR006066 Nitrite and sulfite reductase iron-sulfur/siroheme-binding site

Prediction based on longest six frame method

>SGN-P243518 (697 Aa)

LTFWLRMTTSFGAAINIAAVDDPNPKLQIQRFNGLKSTSNSILLSRRIHRSFSHSNSTSIVRAVSTPAKPAAVEPKRSKVEIFKEQSNFI
RYPLNEEILNDAPNINEAATQLIKFHGSYMQYNRDERGSRSYSFMLRTKNPGGEVPNKLYLVMDDLADQFGIGTLRLTTRQTFQLHGVLK
KDLKTVMSTIIHNMGSTLGACGDLNRNVLAPAAPFAKKDYVFAKQTADNIAALLTPQSGFYYDVWVDGEKFMSVEPPEVVKARNDNSHGT
NFPDSPEPIYGTQFLPRKFKIAVTVPSDNSVDIFTNDIGVVVVSDEDGEPQGFNIYVGGGMGRTHRMETTFPRLAEPLGYVPKADILYAV
KAIVVTQRENGRRDDRRYSRLKYLLSSWGIEKFRSVTEQYYGKKFEPCRELPQWEFKSYLGWHEQGDGSLFCGLHVDNGRVKGEMKKALR
EVIEKYNLNVRLTPNQNIILSNIRQSWKRSITTVLAQGGLLQPRFVDPLNLTAMACPAFPLCPLAITEAERGIPDILKRVRAMFDKVGLR
FYESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTPNQTVLARTFKDKVKVQDLEKVLEPLFFHWKRKRQSKESFGEFSNRLGF
EKLGDLVEKWDGIPESSSRYNLKLFADKETYQAMDALARIQNKNAHQLAIDVIRNYVASQQNGKSMD

SignalP predicts secretion with a score of 0.508

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102206	Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128)	19
2	119866	Sulfite reductase ferredoxin dependent - Molecular Function: iron ion binding (GO:0005506) - Molecular Function: heme binding (GO:0020037) - Molecular Function: sulfite reductase (ferredoxin) activity (GO:0050311) Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like	12
5	130072	Sulfite reductase ferredoxin dependent - Molecular Function: iron ion binding (GO:0005506) - Molecular Function: heme binding (GO:0020037) - Molecular Function: sulfite reductase (ferredoxin) activity (GO:0050311) Nitrite and sulfite reductase iron-sulfur/siroheme-binding site - Biological Process: electron transport (GO:0006118) Nitrite and sulphite reductase 4Fe-4S region - Biological Process: electron transport (GO:0006118) Ferredoxin-nitrite reductase - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors iron-sulfur protein as acceptor (GO:0016664) - Biological Process: nitrate assimilation (GO:0042128) Nitrite/sulfite reductase flavoprotein alpha-component domains 1 and 3 Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin-like	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U214723	Lycopersicon Combined #3
SGN-U217114	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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