Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578346 and SGN-U579075 in the current build, Tomato 200607 #2

Unigene SGN-U314366

Unigene Basic Information

Unigene ID:	SGN-U314366
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314366
mRNA sequence:	Length: 1928 bp

>SGN-U314366 Tomato 200607 #1 (69 members)
CTTGGGCTTTGGTAGATTTTTTTCTACCATCTCACAATTTTTCTTCCCCTTCAGCCCAATGTCGCCGGCGACTTTCTGACCTGCTCGATA
ACCTCCGTCTCTCTCTCCGTTCGAAACAGATTTCTAGGGTTTTGGATTGTTGATTCAAATTTATACATATCGGAATAAGACGATGGCAGC
TCCACCAGCTAGGGCTCGAGCAGATTATGATTATCTCATCAAGCTTCTCCTCATTGGCGATAGCGGTGTGGGAAAGAGTTGTTTACTTCT
GAGATTCTCAGACGGATCCTTCACAACAAGTTTCATCACAACTATTGGAATTGATTTTAAGATAAGAACAATTGAACTTGATGGCAAGCG
GATTAAGTTACAAATTTGGGATACAGCTGGTCAAGAGCGTTTCCGCACTATCACAACAGCGTATTACCGAGGAGCAATGGGGATTCTGCT
GGTGTATGATGTCACGGACGAGTCTTCTTTCAATAACATCAGGAACTGGATTCGCAACATAGAGCAGCATGCTTCTGATAATGTCAACAA
GATTTTGGTCGGGAACAAGGCTGATATGGATGAAAGCAAAAGGGCTGTGCCAACTTCCAAAGGTCAAGCTCTTGCTGATGAATATGGCAT
TAAGTTCTTTGAAACAAGTGCAAAGACAAACCTGAATGTCGAAGAAGTTTTCTTTTCAATTGGTAAGGATATCAAGCAAAGGCTTTCAGA
ATCTGATTCCAAGACTGAGCCTCAGTCAATCAGGATCAACCAATCCGATCAGGCAGGAACTGCTGGTCAAGGTGCCCAGAAGTCATCTTG
CTGTGGTTCGTAAGCCGAGTTGGCTACTGTTTTCTTGATTGCACTTGGATGTACAAATTGGTGGGGATGAAAAACTGATCCTTGTGAACT
TCATTACCATTTATCTGCCATTGGATGGCAAGTTTGGTGTGTCAAAGGCCTTTTCTACTTTATATTTGGAATCTATTTGTCATATACAGC
TTAATAGCCTTTGTTTGGTTATTGTTCTTTGTTATCTATGTCCTCTTAGGATTTCATCTCCTTTTCTTGTTTTAATCATGAAACTATTAG
CTTTTGCTTTGATGTAGAAGGTGAAAGAAAAATATAATAGCTACGCTTACTAATTTTTTTTTCATAAATCAATTCAAAACGAAAGCAATA
CAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTG
GTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTT
ATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTTTTGGAATTGGCTGGAAATG
CAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTG
GTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTA
AATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTA
TGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTA
GGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ypt2	GTP-binding protein	GTP-binding protein

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	9
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	9

mRNA member sequences (69)

Alignment image suppressed for unigene with 69 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 3 | blast: 2 | go: 18 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118418	Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	280
5	128935	Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Ras Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) Ras small GTPase Rab type - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) - Biological Process: protein transport (GO:0015031)	203

Preceding Unigenes (2)

Unigene	Build
SGN-U215406	Lycopersicon Combined #3
SGN-U215834	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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